ViewGene
Locus Name:
GeneID:
Location:

GeneID:5394
TrivialName: PA14_01120
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_01120
PAO1 Ortholog Locus:
Sequence Length:285
Protein Length:94
Start: 110959
Stop: 110675
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03482.1|AE004448_1 (AE004448) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 70/94 (74%), Positives = 84/94 (89%)
Sequence:
ATGTCCCCCGTGAACTATGTCGAACGCGCCCTGGCGCTGGTCGCCGAGCGGCTGGCCCGGCATCCGCAATGC
GGGATGCTGCTCTCCGTGGAAAAGCAGTTGCTGTACCTGAAAGCCGTGCTGCTCGACCGCAGCCTGGACCGT
TCCGCGTTGCACCGGCTGAGCTTCGGCGGCATCGCCGGGAAAGAGTTCGAGGAGACCGACCCGGAACTCGCC
AGGGCCCTCAAGGACGCATTCTACGTCGGCATACGCACTGGCCGCGGCCTGAAGGTCGACCTACCCTGA
Translation:
MSPVNYVERALALVAERLARHPQCGMLLSVEKQLLYLKAVLLDRSLDRSALHRLSFGGIAGKEFEETDPELA
RALKDAFYVGIRTGRGLKVDLP*
AnnotationID:5399GeneID:5394
AnnotatorUID: danlee
Modification Date/Time: 2005-10-21 12:12:28
Gene Name:
Confidence Code:4
GeneProduct:Hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|15595290|ref|NP_248782.1|  hypothetical protein PA0092 [Pseudomonas aeruginosa PAO1]
gi|11348764|pir||A83633  hypothetical protein PA0092 [imported] - Pseudomonas aeruginosa (strain PAO1)
     Length=94
     Score =  143 bits (361),  Expect = 1e-33
     Identities = 70/94 (74%), Positives = 84/94 (89%), Gaps = 0/94 (0%)



gi|26989821|ref|NP_745246.1|  hypothetical protein PP3102 [Pseudomonas putida KT2440]
gi|24984723|gb|AAN68710.1|  conserved hypothetical protein [Pseudomonas putida KT2440]
     Length=98
     Score = 95.9 bits (237),  Expect = 3e-19
     Identities = 52/96 (54%), Positives = 68/96 (70%), Gaps = 6/96 (6%)







 
Structural Features:






   
Genomic Context:
Only partial identity with expected gene PA0092






   
Comment:


















    ReferenceID:10786




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27935




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5394
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7790
                           PA0092_tr
                           translation of PA0092
                           94
                           74.46
                           89.36
                           0
                           361.0
     

     
     
196404
                           gb|AAG03482.1|AE004448_1
                           (AE004448) hypothetical protein PA0092 [Pseudomonas aeruginosa PAO1]
                           94
                           74.46
                           89.36
                           0
                           361.0
     

     






      

          
GC ORFID: 48396How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0092Glimmer Score: 

          
Start: 5912298Stop: 5912014

          
Length: 285


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0092 translation of PA0092Homolog Bit Score 143.0

          
Other Homologs:  t_PA0092 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCCCCGTGAACTATGTCGAACGCGCCCTGGCGCTGGTCGCCGAGCGGCTGGCCCGGCATCCGCAATGC 
GGGATGCTGCTCTCCGTGGAAAAGCAGTTGCTGTACCTGAAAGCCGTGCTGCTCGACCGCAGCCTGGACCGT 
TCCGCGTTGCACCGGCTGAGCTTCGGCGGCATCGCCGGGAAAGAGTTCGAGGAGACCGACCCGGAACTCGCC 
AGGGCCCTCAAGGACGCATTCTACGTCGGCATACGCACTGGCCGCGGCCTGAAGGTCGACCTACCCTGA