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Modification Date/Time: | 2006-04-06 13:01:23 |
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Missense Discrepancy: | FALSE |
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Comments: Homology: gb|AAG03845.1|AE004483_3 (AE004483) probable cold-shock protein [Pseudomonas aeruginosa PAO1]
Identities = 69/69 (100%), Positives = 69/69 (100%)
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Sequence:
ATGTCCCGTCAGAACGGCACCGTTAAGTGGTTCAACGAAACCAAAGGCTACGGCTTCATTACCCCGGAAAGC
GGCCCGGACGTTTTCGTTCACTTCCGTGCCATCGAAGGTAACGGCTTCAAGACCCTGGCCGAAGGCCAGAAG
GTCAGCTTCGAAGTCGTACAAGGCCAGAAAGGCATGCAGGCCGAGCGCGTTCAGGTGATCAACTAA |
Translation:
MSRQNGTVKWFNETKGYGFITPESGPDVFVHFRAIEGNGFKTLAEGQKVSFEVVQGQKGMQAERVQVIN* |
AnnotationID:5397 | GeneID:5392 |
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Modification Date/Time: |
2005-03-25 14:02:49 |
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GeneProduct: | putative major cold shock protein |
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Cell Localization Confidence Code: | 5 |
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Functional Category: | (25) Transcriptional regulators |
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Alternate Gene Product Name: | putative cold acclimation protein B |
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Functional Category Confidence Code: | 5 |
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Secondary Functional Category(ies): | adaptation, protection |
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Homology: | >gb|AAN66610.1|AE016288_9 (AE016777) cold-shock domain family protein [Pseudomonas putida
KT2440]
Length = 165
Score = 118 bits (296), Expect = 7e-27
Identities = 53/66 (80%), Positives = 61/66 (92%)
>gb|AAM41566.1| (AE012336) major cold shock protein [Xanthomonas campestris pv.
campestris str. ATCC 33913]
Length = 69
Score = 114 bits (286), Expect = 1e-25
Identities = 51/66 (77%), Positives = 59/66 (89%)
>gb|AAO29822.1| (AE012560) temperature acclimation protein B [Xylella fastidiosa
Temecula1]
Length = 73
Score = 109 bits (272), Expect = 4e-24
Identities = 49/66 (74%), Positives = 59/66 (89%)
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Structural Features: | pfam00313, CSD, 'Cold-shock' DNA-binding domain.
CD-Length = 67 residues, 100.0% aligned
Score = 90.6 bits (225), Expect = 3e-20
Identities = 42/67 (62%), Positives = 51/67 (76%), Gaps = 1/67 (1%)
smart00357, CSP, Cold shock protein domain
CD-Length = 62 residues, 100.0% aligned
Score = 58.3 bits (141), Expect = 2e-10
Identities = 32/66 (48%), Positives = 40/66 (60%), Gaps = 7/66 (10%)
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Comment: | another possible gene name: capB |
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