ViewGene
Locus Name:
GeneID:
Location:

GeneID:5391
TrivialName: PA14_32890
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_32890
PAO1 Ortholog Locus:PA2453
Sequence Length:222
Protein Length:73
Start: 2878192
Stop: 2877971
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05841.1|AE004673_1 (AE004673) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 73/73 (100%), Positives = 73/73 (100%)
Sequence:
ATGACCTCCCGTCTGCTGCCCGCCCTGTTGCTCTCGTCCGCATTCGCCGTCCTGGCCGGCTGCTCCACCCCG
ACCATCGTCACCCTCAACGATGGCCGCGAGATCCAGGCGGTGGATACCCCGCGCTATGATCGTAGTTCCGGC
TTCTACGAACTGGAGCAACTGGACGGCAAGCGCACCCGCGTCAACAAGGACCAGGTGCGCAGCATCAAGGAC
ATGTAA
Translation:
MTSRLLPALLLSSAFAVLAGCSTPTIVTLNDGREIQAVDTPRYDRSSGFYELEQLDGKRTRVNKDQVRSIKD
M*
AnnotationID:5396GeneID:5391
AnnotatorUID: danlee
Modification Date/Time: 2004-03-08 14:02:22
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA2453
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:10780




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27929




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5391
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7784
                           PA2453_tr
                           translation of PA2453
                           73
                           99.99
                           99.99
                           0
                           364.0
     

     
     
196370
                           gb|AAG05841.1|AE004673_1
                           (AE004673) hypothetical protein PA2453 [Pseudomonas aeruginosa PAO1]
                           73
                           99.99
                           99.99
                           0
                           364.0
     

     
     
7785
                           PA3031_tr
                           translation of PA3031
                           73
                           71.23
                           83.56
                           0
                           284.0
     

     
     
196371
                           gb|AAG06419.1|AE004728_5
                           (AE004728) hypothetical protein PA3031 [Pseudomonas aeruginosa PAO1]
                           73
                           71.23
                           83.56
                           0
                           284.0
     

     
     
196372
                           gb|AAC15715.1|
                           (AF053982) unknown [Pseudomonas aeruginosa]
                           73
                           71.23
                           83.56
                           0
                           284.0
     

     






      

          
GC ORFID: 48393How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2453Glimmer Score: 

          
Start: 2075732Stop: 2075953

          
Length: 222


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA2453 translation of PA2453Homolog Bit Score 144.0

          
Other Homologs:  t_PA3031 (ORF: BLASTX 114.0), psyr_15may02_Scaffold1_revised_gene337 (ORF: BLASTX 107.0), t_PA2453 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCTCCCGTCTGCTGCCCGCCCTGTTGCTCTCGTCCGCATTCGCCGTCCTGGCCGGCTGCTCCACCCCG 
ACCATCGTCACCCTCAACGATGGCCGCGAGATCCAGGCGGTGGATACCCCGCGCTATGATCGTAGTTCCGGC 
TTCTACGAACTGGAGCAACTGGACGGCAAGCGCACCCGCGTCAACAAGGACCAGGTGCGCAGCATCAAGGAC 
ATGTAA