ViewGene
Locus Name:
GeneID:
Location:

GeneID:5390
TrivialName: PA14_44450
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_44450
PAO1 Ortholog Locus:PA1548
Sequence Length:210
Protein Length:69
Start: 3958562
Stop: 3958771
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04937.1|AE004583_2 (AE004583) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 69/69 (100%), Positives = 69/69 (100%)
Sequence:
ATGGCCGCGCTCTACATCCTGATCCCCGTCGCGATCGTCATCGTCGCCATCGCCATCTACGTGTTCTTCTGG
GCGGTGGACAGCGGCCAGTACGACGATCTCGACGGCCCCGCCCACAGCATTCTCTTCGACGACGAAGACCCG
AAGCACCAGGCCGGCGTCGACGAAGCGGAGAAGCCGTCGAAACCCGAGGACCGACCGCGTGGCTGA
Translation:
MAALYILIPVAIVIVAIAIYVFFWAVDSGQYDDLDGPAHSILFDDEDPKHQAGVDEAEKPSKPEDRPRG*
AnnotationID:5395GeneID:5390
AnnotatorUID: danlee
Modification Date/Time: 2006-02-03 14:02:00
Gene Name:
Confidence Code:3
GeneProduct:putative cytochrome oxidase maturation protein cbb3-type
Cell Localization:()
Synonyms:PA1548, fixS
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3197,pfam03597
Secondary Functional Category(ies):inorganic ion transport and metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69842.1|AE016623_4 (AE016790) cytochrome oxidase maturation protein, cbb3-type
          [Pseudomonas putida KT2440]
          Length = 71

 Score = 99.8 bits (247), Expect = 3e-21
 Identities = 44/70 (62%), Positives = 57/70 (81%), Gaps = 2/70 (2%)

>gb|AAO55513.1| (AE016862) cytochrome oxidase maturation protein, cbb3-type
          [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 67

 Score = 85.9 bits (211), Expect = 5e-17
 Identities = 41/63 (65%), Positives = 47/63 (74%), Gaps = 7/63 (11%)

>gb|AAN55392.1|AE015677_3 (AE015677) cytochrome oxidase maturation protein, cbb3-type
          [Shewanella oneidensis MR-1]
          Length = 67

 Score = 62.4 bits (150), Expect = 6e-10
 Identities = 30/63 (47%), Positives = 44/63 (69%), Gaps = 1/63 (1%)






 
Structural Features:
COG3197, FixS, Uncharacterized protein, possibly involved in nitrogen fixation 
[Inorganic ion transport and metabolism]
CD-Length = 58 residues,  98.3% aligned
Score = 74.9 bits (184), Expect = 2e-15
Identities = 32/57 (56%), Positives = 42/57 (73%)

pfam03597, CcoS, Cytochrome oxidase maturation protein cbb3-type.
CD-Length = 49 residues, 100.0% aligned
Score = 72.2 bits (177), Expect = 1e-14
Identities = 26/49 (53%), Positives = 34/49 (69%)






   
Genomic Context:






   
Comment:


















    ReferenceID:10778




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27927




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37239




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5390_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5390
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7783
                           PA1548_tr
                           translation of PA1548
                           69
                           99.99
                           99.99
                           0
                           362.0
     

     
     
196369
                           gb|AAG04937.1|AE004583_2
                           (AE004583) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           69
                           99.99
                           99.99
                           0
                           362.0
     

     






      

          
GC ORFID: 48392How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1548Glimmer Score: 

          
Start: 995347Stop: 995138

          
Length: 210


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1548 translation of PA1548Homolog Bit Score 144.0

          
Other Homologs:  t_PA1548 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCCGCGCTCTACATCCTGATCCCCGTCGCGATCGTCATCGTCGCCATCGCCATCTACGTGTTCTTCTGG 
GCGGTGGACAGCGGCCAGTACGACGATCTCGACGGCCCCGCCCACAGCATTCTCTTCGACGACGAAGACCCG 
AAGCACCAGGCCGGCGTCGACGAAGCGGAGAAGCCGTCGAAACCCGAGGACCGACCGCGTGGCTGA