ViewGene
Locus Name:
GeneID:
Location:

GeneID:539
TrivialName: PA14_32950
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_32950
PAO1 Ortholog Locus:PA2448
Sequence Length:1743
Protein Length:580
Start: 2884416
Stop: 2882674
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05836.1|AE004672_4 (AE004672) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 576/580 (99%), Positives = 577/580 (99%)
Sequence:
ATGAAGCAACGGATTCCCACCCTCCTCGCCGGCGCCTGCCTGGCCATCCCCCTGCACGCCCTCGGCGCCGCC
GACCTGCTGGTGGTCAACGCCAGGATCTTCACCGCCAATCCGCAGCAACCCTTCGCCGAGGCCCTGGCGGTG
GAGGACGGGCGGATCCTCGCGGTCGGCGACGAGGCCGGGCTGCGCGCCCTGGCCGATGGCGACAGCCAGGTC
GTCGATCTCGGCGGCAAGCGCCTGATGCCCGGCCTGATCGACACCCATTCGCACGCGGTGTTCGGCGGCCTG
GAGCTGGCCGGCGCGGACATGGGCAACGAACAGGTCGGCCTCGACGAACTGGAACGGCGCCTGCGCGCCTGG
CGCGACAACGGCAAGGCGCGACATGGCGACATGCTCAATGTCAGCGGCATGCATACCGCCTACTGGAGCCAG
GTCAAGGACTTCCGCGCGCGCTTCGACCACGGCGAATGGGCCGACCAGCCGCTGGCCTTCATCGGCAGCGAC
CACCACACCGGCTGGGCCAACGCCGCCATGCTGAAACGCGCCGGCATCGACGCCGCGCGGGTCCGCGCCCTG
CCCAAGGAACAGCGCAACACCATCGGCCACGACGCCGACGCCACCCCCAACGGCTTCCTCGCCGATGCTGGT
CTCGACGCGGTGCTCGCGGTACTGCCGGCGCCGAGCGCGGAACAGATGCTAGAAGCCGGACGCAGCGCGGTG
CGCTACAGCAACTCGCTGGGCCTGACCGCATGGATGGACCCGGCCGCCAATGGCTCGCCGGGCGACGCCCTG
TTCAGCCTCAGGCCCGACGAGAACACCGTCGGCGTGCTACCGGTCTACCAGCGGCTGGCCAAGGGCGGCGAA
CTCAGCGCCCACGTCGCCGCCCTCCTGGTCGCCAACCCACGCAGCCGGCCGGCCGACCTCGAGGTGCTGGAC
AAGGTGCGCCAGCGCTTCCTCGGCAGCCCCAACCTGACCCTGCCGGGAATCAAGGTGTTCGCCGACGGCGTA
CCGGAATACCCGGCGCAGACCGCCGCGCTCCTCGAGCCCTACCGCAACAGCAGGAAGACGGGCGAACTGCTG
ATCGACCCGGCGCACTTCGGCGAACTGGTCAGCGCCGCCGACGCCCGCGGCTGGCTGGTCCACGTCCACGCC
ATCGGCGACCGCGCGGTGCGCGAGGCGCTGAACGGCATGCAGCAGGCGCGGCGCGACCGCGACAGCGGCATC
GCCCATTCGATCACCCACCTGCAACTGGTCAATCCCAAGGAATTCGAGCGCTTCAGGCCGCTCGGCGTGATC
GCCTCGATGCAGCTGTACTGGGCCGCCGCCGACGAAACCACGGTGGACCTGATGAAGCCCTACATCAGCGCC
TTCGCCTACCGCTACCAGTACCCGGCGCACTCCCTGCTGAGCAAGGGCGCGACCATCGCCGGGGCCAGCGAC
TGGCCAGTGTCCAGCCTGTCGCCGTGGAAGGCCATCCAGCAGGCGGTGACCCGCAAGGGCCCGCAGGGCGTG
CTCAATGCCGGCGAACGCCTGGACCGCCAGACCATGTTCTACGCCTACACCCGCAACGCTGCGCGGACCATC
GGCCTGGAGCGCCGGATCGGCAGCCTGGAGCCGGGCAAGCAGGCGGACTTCATCGTCCTTGACCGCGACGTG
TTCGAGGTGCCGGAGACGCAACTGGGCGAAACCAAAGTGCTGAAGACCTGGTTCGCCGGCAAGCCGGTGTAT
TCCAGCGAGGGCTGA
Translation:
MKQRIPTLLAGACLAIPLHALGAADLLVVNARIFTANPQQPFAEALAVEDGRILAVGDEAGLRALADGDSQV
VDLGGKRLMPGLIDTHSHAVFGGLELAGADMGNEQVGLDELERRLRAWRDNGKARHGDMLNVSGMHTAYWSQ
VKDFRARFDHGEWADQPLAFIGSDHHTGWANAAMLKRAGIDAARVRALPKEQRNTIGHDADATPNGFLADAG
LDAVLAVLPAPSAEQMLEAGRSAVRYSNSLGLTAWMDPAANGSPGDALFSLRPDENTVGVLPVYQRLAKGGE
LSAHVAALLVANPRSRPADLEVLDKVRQRFLGSPNLTLPGIKVFADGVPEYPAQTAALLEPYRNSRKTGELL
IDPAHFGELVSAADARGWLVHVHAIGDRAVREALNGMQQARRDRDSGIAHSITHLQLVNPKEFERFRPLGVI
ASMQLYWAAADETTVDLMKPYISAFAYRYQYPAHSLLSKGATIAGASDWPVSSLSPWKAIQQAVTRKGPQGV
LNAGERLDRQTMFYAYTRNAARTIGLERRIGSLEPGKQADFIVLDRDVFEVPETQLGETKVLKTWFAGKPVY
SSEG*
AnnotationID:548GeneID:539
AnnotatorUID: danlee
Modification Date/Time: 2004-03-08 14:02:15
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA2448
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gb|AAG05836.1|AE004672_4 (AE004672) hypothetical protein [Pseudomonas aeruginosa PAO1]
          Length = 580

 Score = 1151 bits (2977), Expect = 0.0
 Identities = 576/580 (99%), Positives = 577/580 (99%)

PA2448






 
Structural Features:
COG1574: Predicted metal-dependent hydrolase with the TIM-barrel fold






   
Genomic Context:






   
Comment:


















    ReferenceID:1081




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18223




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:539
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
937
                           PA2448_tr
                           translation of PA2448
                           580
                           99.31
                           99.48
                           0
                           2977.0
     

     
     
37767
                           gb|AAG05836.1|AE004672_4
                           (AE004672) hypothetical protein PA2448 [Pseudomonas aeruginosa PAO1]
                           580
                           99.31
                           99.48
                           0
                           2977.0
     

     
     
37768
                           gb|AAL53488.1|
                           (AE009663) EXOENZYMES REGULATORY PROTEIN AEPA PRECURSOR [Brucella melitensis 16M]
                           584
                           47.94
                           65.06
                           5
                           1390.0
     

     
     
37769
                           gb|AAN34220.1|AE014598_1
                           (AE014598) conserved hypothetical protein [Brucella suis 1330]
                           584
                           47.94
                           65.06
                           5
                           1389.0
     

     






      

          
GC ORFID: 43541How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2448Glimmer Score: 

          
Start: 2069508Stop: 2071250

          
Length: 1743


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2448 translation of PA2448Homolog Bit Score 1151.0

          
Other Homologs:  t_PA2448 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAGCAACGGATTCCCACCCTCCTCGCCGGCGCCTGCCTGGCCATCCCCCTGCACGCCCTCGGCGCCGCC 
GACCTGCTGGTGGTCAACGCCAGGATCTTCACCGCCAATCCGCAGCAACCCTTCGCCGAGGCCCTGGCGGTG 
GAGGACGGGCGGATCCTCGCGGTCGGCGACGAGGCCGGGCTGCGCGCCCTGGCCGATGGCGACAGCCAGGTC 
GTCGATCTCGGCGGCAAGCGCCTGATGCCCGGCCTGATCGACACCCATTCGCACGCGGTGTTCGGCGGCCTG 
GAGCTGGCCGGCGCGGACATGGGCAACGAACAGGTCGGCCTCGACGAACTGGAACGGCGCCTGCGCGCCTGG 
CGCGACAACGGCAAGGCGCGACATGGCGACATGCTCAATGTCAGCGGCATGCATACCGCCTACTGGAGCCAG 
GTCAAGGACTTCCGCGCGCGCTTCGACCACGGCGAATGGGCCGACCAGCCGCTGGCCTTCATCGGCAGCGAC 
CACCACACCGGCTGGGCCAACGCCGCCATGCTGAAACGCGCCGGCATCGACGCCGCGCGGGTCCGCGCCCTG 
CCCAAGGAACAGCGCAACACCATCGGCCACGACGCCGACGCCACCCCCAACGGCTTCCTCGCCGATGCTGGT 
CTCGACGCGGTGCTCGCGGTACTGCCGGCGCCGAGCGCGGAACAGATGCTAGAAGCCGGACGCAGCGCGGTG 
CGCTACAGCAACTCGCTGGGCCTGACCGCATGGATGGACCCGGCCGCCAATGGCTCGCCGGGCGACGCCCTG 
TTCAGCCTCAGGCCCGACGAGAACACCGTCGGCGTGCTACCGGTCTACCAGCGGCTGGCCAAGGGCGGCGAA 
CTCAGCGCCCACGTCGCCGCCCTCCTGGTCGCCAACCCACGCAGCCGGCCGGCCGACCTCGAGGTGCTGGAC 
AAGGTGCGCCAGCGCTTCCTCGGCAGCCCCAACCTGACCCTGCCGGGAATCAAGGTGTTCGCCGACGGCGTA 
CCGGAATACCCGGCGCAGACCGCCGCGCTCCTCGAGCCCTACCGCAACAGCAGGAAGACGGGCGAACTGCTG 
ATCGACCCGGCGCACTTCGGCGAACTGGTCAGCGCCGCCGACGCCCGCGGCTGGCTGGTCCACGTCCACGCC 
ATCGGCGACCGCGCGGTGCGCGAGGCGCTGAACGGCATGCAGCAGGCGCGGCGCGACCGCGACAGCGGCATC 
GCCCATTCGATCACCCACCTGCAACTGGTCAATCCCAAGGAATTCGAGCGCTTCAGGCCGCTCGGCGTGATC 
GCCTCGATGCAGCTGTACTGGGCCGCCGCCGACGAAACCACGGTGGACCTGATGAAGCCCTACATCAGCGCC 
TTCGCCTACCGCTACCAGTACCCGGCGCACTCCCTGCTGAGCAAGGGCGCGACCATCGCCGGGGCCAGCGAC 
TGGCCAGTGTCCAGCCTGTCGCCGTGGAAGGCCATCCAGCAGGCGGTGACCCGCAAGGGCCCGCAGGGCGTG 
CTCAATGCCGGCGAACGCCTGGACCGCCAGACCATGTTCTACGCCTACACCCGCAACGCTGCGCGGACCATC 
GGCCTGGAGCGCCGGATCGGCAGCCTGGAGCCGGGCAAGCAGGCGGACTTCATCGTCCTTGACCGCGACGTG 
TTCGAGGTGCCGGAGACGCAACTGGGCGAAACCAAAGTGCTGAAGACCTGGTTCGCCGGCAAGCCGGTGTAT 
TCCAGCGAGGGCTGA