ViewGene
Locus Name:
GeneID:
Location:

GeneID:5388
TrivialName: PA14_00470
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_00470
PAO1 Ortholog Locus:PA0038
Sequence Length:216
Protein Length:71
Start: 40211
Stop: 40426
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03428.1|AE004443_6 (AE004443) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 71/71 (100%), Positives = 71/71 (100%)
Sequence:
ATGTCCAATCACCACACCTACAAGAAGATCGAACTGGTCGGCTCGTCCAAGACCAGCATCGAGGACGCCATC
AACAACGCCCTCGCCGAAGCGGCGAAGAGCATCCAGCATCTGGAATGGTTCGAGGTGGTGGATACCCGCGGG
CACATCGAGAACGGCGCCGTCGGCCATTACCAGGTGACCCTGAAAGTAGGGTTCCGTATCGCCAATAGCTGA
Translation:
MSNHHTYKKIELVGSSKTSIEDAINNALAEAAKSIQHLEWFEVVDTRGHIENGAVGHYQVTLKVGFRIANS*
AnnotationID:5393GeneID:5388
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 14:02:14
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0038
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:10774




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27923




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33388




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5388_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5388
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7781
                           PA0038_tr
                           translation of PA0038
                           71
                           99.99
                           99.99
                           0
                           365.0
     

     
     
196365
                           gb|AAG03428.1|AE004443_6
                           (AE004443) hypothetical protein PA0038 [Pseudomonas aeruginosa PAO1]
                           71
                           99.99
                           99.99
                           0
                           365.0
     

     
     
196366
                           gb|AAN65720.1|AE016198_7
                           (AE016774) conserved hypothetical protein [Pseudomonas putida KT2440]
                           71
                           81.69
                           90.14
                           0
                           304.0
     

     
     
196367
                           gb|AAO53709.1|
                           (AE016856) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           71
                           78.87
                           91.54
                           0
                           300.0
     

     






      

          
GC ORFID: 48390How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0038Glimmer Score: 

          
Start: 5841548Stop: 5841763

          
Length: 216


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0038 translation of PA0038Homolog Bit Score 145.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene2989 (ORF: BLASTX 119.0), t_PA0038 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCAATCACCACACCTACAAGAAGATCGAACTGGTCGGCTCGTCCAAGACCAGCATCGAGGACGCCATC 
AACAACGCCCTCGCCGAAGCGGCGAAGAGCATCCAGCATCTGGAATGGTTCGAGGTGGTGGATACCCGCGGG 
CACATCGAGAACGGCGCCGTCGGCCATTACCAGGTGACCCTGAAAGTAGGGTTCCGTATCGCCAATAGCTGA