ViewGene

Locus Name:
GeneID:
Location:

GeneID:5387
TrivialName: PA14_24880
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_24880
PAO1 Ortholog Locus:PA3031
Sequence Length:222
Protein Length:73
Start: 2174540
Stop: 2174319
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06419.1|AE004728_5 (AE004728) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 73/73 (100%), Positives = 73/73 (100%)
Sequence:
ATGATCAAGCGGATGCTACCCGCCCTCCTCCTCGCCGTAGGCCTCGGCGCCCTCGCGGGTTGTTCCAGCCCT
ACCGTGATCACCCTCAACGACGGACGTGAAATCCAGGCCGTAGACACCCCTTCCTATGACGAGGATTCCGGC
TTCTACGAGTTCGAACAGCTCGACGGCAAGCGCGCCCGCGTGAACAAGGACCAGGTCCGCACCGTCAAGGAA
CTCTGA
Translation:
MIKRMLPALLLAVGLGALAGCSSPTVITLNDGREIQAVDTPSYDEDSGFYEFEQLDGKRARVNKDQVRTVKE
L*
AnnotationID:5392GeneID:5387
AnnotatorUID: diggins
Modification Date/Time: 2005-04-12 06:06:50
Gene Name:
Confidence Code:3
GeneProduct:putative lipoprotein
Cell Localization:()
Synonyms:PA3031
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN67734.1|AE016404_9 (AE016782) lipoprotein, putative [Pseudomonas putida KT2440]
          Length = 73

 Score =  132 bits (333), Expect = 3e-31
 Identities = 64/73 (87%), Positives = 68/73 (93%)

>gb|AAO55861.1| (AE016864) lipoprotein, putative [Pseudomonas syringae pv. tomato
          str. DC3000]
          Length = 74

 Score =  116 bits (291), Expect = 3e-26
 Identities = 57/74 (77%), Positives = 66/74 (89%), Gaps = 1/74 (1%)

Structural Features:
Genomic Context:
Comment:
ReferenceID:10772
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:27921
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36017
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:5387_cdd.html
URL:
Homologs By Global Alignment
Gene ID:5387

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7779 PA3031_tr translation of PA3031 73 99.99 99.99 0 367.0
196360 gb|AAG06419.1|AE004728_5 (AE004728) hypothetical protein PA3031 [Pseudomonas aeruginosa PAO1] 73 99.99 99.99 0 367.0
196361 gb|AAC15715.1| (AF053982) unknown [Pseudomonas aeruginosa] 73 99.99 99.99 0 367.0
196362 gb|AAN67734.1|AE016404_9 (AE016782) lipoprotein, putative [Pseudomonas putida KT2440] 73 87.67 93.15 0 333.0
196363 gb|AAO55861.1| (AE016864) lipoprotein, putative [Pseudomonas syringae pv. tomato str. DC3000] 74 77.02 89.18 1 293.0
GC ORFID: 48389How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3031Glimmer Score:
Start: 2779388Stop: 2779609
Length: 222
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3031 translation of PA3031Homolog Bit Score 145.0
Other Homologs: psyr_15may02_Scaffold1_revised_gene337 (ORF: BLASTX 116.0), t_PA2453 (ORF: BLASTX 114.0), t_PA3031 (ORF: GLIMMER)
GC ORF Sequence
ATGATCAAGCGGATGCTACCCGCCCTCCTCCTCGCCGTAGGCCTCGGCGCCCTCGCGGGTTGTTCCAGCCCT
ACCGTGATCACCCTCAACGACGGACGTGAAATCCAGGCCGTAGACACCCCTTCCTATGACGAGGATTCCGGC
TTCTACGAGTTCGAACAGCTCGACGGCAAGCGCGCCCGCGTGAACAAGGACCAGGTCCGCACCGTCAAGGAA
CTCTGA