ViewGene

Locus Name:
GeneID:
Location:

GeneID:5386
TrivialName: PA14_38370
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_38370
PAO1 Ortholog Locus:PA2021
Sequence Length:225
Protein Length:74
Start: 3420659
Stop: 3420883
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05409.1|AE004628_7 (AE004628) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 73/74 (98%), Positives = 74/74 (100%)
Sequence:
ATGTCCATCGAAATCGATTCGGAACAAGGCATCTGCAGCGTGGAGATCGAAGGCAGCCGGCATCGCGCGCCG
GTCGACAGCCTGCGCATCGGTACCGACGCCGAGGCGCGCCTGTCGGTGCTCTACATCGATGGCAAGCGCCTG
CACATCAGCGAGGAGGACGCCCAGCGGCTGGTGGTCGCCGGCGCCGAGGACCAGCGCAGGCACCTGATGGCG
GACGATTGA
Translation:
MSIEIDSEQGICSVEIEGSRHRAPVDSLRIGTDAEARLSVLYIDGKRLHISEEDAQRLVVAGAEDQRRHLMA
DD*
AnnotationID:5391GeneID:5386
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 20:08:56
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2021
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:10770
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:27919
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:5386

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7778 PA2021_tr translation of PA2021 74 98.64 99.99 0 367.0
196359 gb|AAG05409.1|AE004628_7 (AE004628) hypothetical protein PA2021 [Pseudomonas aeruginosa PAO1] 74 98.64 99.99 0 367.0
GC ORFID: 48388How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2021Glimmer Score:
Start: 1533251Stop: 1533027
Length: 225
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2021 translation of PA2021Homolog Bit Score 145.0
Other Homologs: t_PA2021 (ORF: GLIMMER)
GC ORF Sequence
ATGTCCATCGAAATCGATTCGGAACAAGGCATCTGCAGCGTGGAGATCGAAGGCAGCCGGCATCGCGCGCCG
GTCGACAGCCTGCGCATCGGTACCGACGCCGAGGCGCGCCTGTCGGTGCTCTACATCGATGGCAAGCGCCTG
CACATCAGCGAGGAGGACGCCCAGCGGCTGGTGGTCGCCGGCGCCGAGGACCAGCGCAGGCACCTGATGGCG
GACGATTGA