ViewGene
Locus Name:
GeneID:
Location:

GeneID:5385
TrivialName: PA14_08140
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_08140
PAO1 Ortholog Locus:PA0627
Sequence Length:207
Protein Length:68
Start: 699383
Stop: 699589
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04016.1|AE004498_11 (AE004498) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 68/68 (100%), Positives = 68/68 (100%)
Sequence:
ATGGCGACGACCTGCCGAACCGCTGACGGCGACATGCTGGACAGCCTCTGCTACCACGTCTATGGCCATCTG
TTGGGCTGCGTCGAGGCGACCCTCGACGCCAATCCCGGGCTGGCCGATGAGCAGCAGCCATTCCGCGCCGGC
TTGCTGATCAGTTTCCCTGACATGCCGGTGGTCAATGTCGAACAGGTGCGCCTGTGGGATTGA
Translation:
MATTCRTADGDMLDSLCYHVYGHLLGCVEATLDANPGLADEQQPFRAGLLISFPDMPVVNVEQVRLWD*
AnnotationID:5390GeneID:5385
AnnotatorUID: diggins
Modification Date/Time: 2005-03-29 13:01:40
Gene Name:
Confidence Code:3
GeneProduct:putative phage protein X
Cell Localization:()
Synonyms:XR2
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(22) Related to phage, transposon, or plasmid
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam05489
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN68672.1|AE016496_6 (AE016785) pyocin R2_PP, tail component protein [Pseudomonas
          putida KT2440]
          Length = 68

 Score = 92.0 bits (227), Expect = 7e-19
 Identities = 43/67 (64%), Positives = 52/67 (77%)

>gb|AAO56869.1| (AE016868) tail protein X [Pseudomonas syringae pv. tomato str.
          DC3000]
          Length = 68

 Score = 89.4 bits (220), Expect = 4e-18
 Identities = 41/67 (61%), Positives = 49/67 (73%)






 
Structural Features:
pfam05489, Phage Tail Protein X
CD-Length = 60 residues, 100.0% aligned
Score = 82.6 bits (204), Expect = 9e-18
Identities = 26/60 (43%), Positives = 31/60 (51%)






   
Genomic Context:






   
Comment:


















    ReferenceID:10768




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27917




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34598




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5385_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5385
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7777
                           PA0627_tr
                           translation of PA0627
                           68
                           99.99
                           99.99
                           0
                           368.0
     

     
     
196357
                           gb|AAG04016.1|AE004498_11
                           (AE004498) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           68
                           99.99
                           99.99
                           0
                           368.0
     

     
     
196358
                           dbj|BAA83166.1|
                           (AB030825) PRF22~similar to X genes of P2 and phiCTX: tail formation [Pseudomonas aeruginosa]
                           68
                           99.99
                           99.99
                           0
                           368.0
     

     






      

          
GC ORFID: 48387How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0627Glimmer Score: 

          
Start: 6500726Stop: 6500932

          
Length: 207


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0627 translation of PA0627Homolog Bit Score 146.0

          
Other Homologs:  t_PA0627 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCGACGACCTGCCGAACCGCTGACGGCGACATGCTGGACAGCCTCTGCTACCACGTCTATGGCCATCTG 
TTGGGCTGCGTCGAGGCGACCCTCGACGCCAATCCCGGGCTGGCCGATGAGCAGCAGCCATTCCGCGCCGGC 
TTGCTGATCAGTTTCCCTGACATGCCGGTGGTCAATGTCGAACAGGTGCGCCTGTGGGATTGA