ViewGene
Locus Name:
GeneID:
Location:

GeneID:5384
TrivialName: PA14_56690
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_56690
PAO1 Ortholog Locus:PA4359
Sequence Length:228
Protein Length:75
Start: 5051056
Stop: 5050829
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07747.1|AE004851_15 (AE004851) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 75/75 (100%), Positives = 75/75 (100%)
Sequence:
ATGAGCGCATTGCAACCGTCCCGTTCCTACCGCATCACCGGTTATTCCCCCGCCATCAGCAACGGCTATCGC
CAACGCCTGTTCTCCATGGGGCTTCTGCCCGGCGCGGCGCTGCGCGTGGTGCGTATCGCCCCGCTGGGCGAC
CCGATCCAGGTCGAGACCCGCCAGACCAGCCTGGCGCTGCGGCGCAAGGACCTCGCCCTGCTGACCCTCGTC
CCGCTCGACTGA
Translation:
MSALQPSRSYRITGYSPAISNGYRQRLFSMGLLPGAALRVVRIAPLGDPIQVETRQTSLALRRKDLALLTLV
PLD*
AnnotationID:5389GeneID:5384
AnnotatorUID: diggins
Modification Date/Time: 2005-05-02 06:06:14
Gene Name:
Confidence Code:3
GeneProduct:putative iron transport protein
Cell Localization:()
Synonyms:feoA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1918,pfam04023
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gb|AAM87456.1|AE013996_1 (AE013996) ferrous iron transport protein A [Yersinia pestis KIM]
          Length = 75

 Score = 94.4 bits (233), Expect = 1e-19
 Identities = 44/68 (64%), Positives = 56/68 (82%)

>gb|AAN82623.1|AE016768_41 (AE016768) Ferrous iron transport protein A [Escherichia coli
          CFT073]
          Length = 75

 Score = 85.9 bits (211), Expect = 5e-17
 Identities = 39/64 (60%), Positives = 52/64 (81%)






 
Structural Features:
COG1918, FeoA, Fe2+ transport system protein A 
[Inorganic ion transport and metabolism]
CD-Length = 75 residues, 100.0% aligned
Score = 76.8 bits (189), Expect = 8e-16
Identities = 33/75 (44%), Positives = 47/75 (62%)

pfam04023, FeoA, FeoA domain.
CD-Length = 73 residues,  97.3% aligned
Score = 57.9 bits (140), Expect = 4e-10
Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 2/73 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:10766




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17110




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5384_cdd.html


    		




 
URL:

















    ReferenceID:27915




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5384
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7776
                           PA4359_tr
                           translation of PA4359
                           75
                           99.99
                           99.99
                           0
                           368.0
     

     
     
196356
                           gb|AAG07747.1|AE004851_15
                           (AE004851) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           75
                           99.99
                           99.99
                           0
                           368.0
     

     






      

          
GC ORFID: 48386How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4359Glimmer Score: 

          
Start: 4314732Stop: 4314505

          
Length: 228


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4359 translation of PA4359Homolog Bit Score 146.0

          
Other Homologs:  t_PA4359 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGCATTGCAACCGTCCCGTTCCTACCGCATCACCGGTTATTCCCCCGCCATCAGCAACGGCTATCGC 
CAACGCCTGTTCTCCATGGGGCTTCTGCCCGGCGCGGCGCTGCGCGTGGTGCGTATCGCCCCGCTGGGCGAC 
CCGATCCAGGTCGAGACCCGCCAGACCAGCCTGGCGCTGCGGCGCAAGGACCTCGCCCTGCTGACCCTCGTC 
CCGCTCGACTGA