ViewGene
Locus Name:
GeneID:
Location:

GeneID:5383
TrivialName: PA14_19970
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_19970
PAO1 Ortholog Locus:PA3411
Sequence Length:219
Protein Length:72
Start: 1719866
Stop: 1720084
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06799.1|AE004762_5 (AE004762) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 72/72 (100%), Positives = 72/72 (100%)
Sequence:
ATGCAAGACCTCGGTTTCGCCCTCCTGCTCATCGGCTATGTCTGGTCCGTGGCCAGCGGCGGCCGCCGTTCG
ATCCCCTGCGCATTGCTCTGCCTGCTGCTGTTTCCGCTGGCGCAACTGGCCTTCGCCATCAACGACGCGCCG
ATGCGCCCGCCGCTGGCGCTGGCGGCCTTTGGCGCGGGCCTGGCCTACCTCGGCGGCGGCTCGGTGTTCGGC
TGA
Translation:
MQDLGFALLLIGYVWSVASGGRRSIPCALLCLLLFPLAQLAFAINDAPMRPPLALAAFGAGLAYLGGGSVFG
*
AnnotationID:5388GeneID:5383
AnnotatorUID: diggins
Modification Date/Time: 2005-04-18 12:12:12
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA3411
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:10764




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27913




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5383
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7775
                           PA3411_tr
                           translation of PA3411
                           72
                           99.99
                           99.99
                           0
                           369.0
     

     
     
196355
                           gb|AAG06799.1|AE004762_5
                           (AE004762) hypothetical protein PA3411 [Pseudomonas aeruginosa PAO1]
                           72
                           99.99
                           99.99
                           0
                           369.0
     

     






      

          
GC ORFID: 48385How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3411Glimmer Score: 

          
Start: 3234066Stop: 3233848

          
Length: 219


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3411 translation of PA3411Homolog Bit Score 146.0

          
Other Homologs:  t_PA3411 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAAGACCTCGGTTTCGCCCTCCTGCTCATCGGCTATGTCTGGTCCGTGGCCAGCGGCGGCCGCCGTTCG 
ATCCCCTGCGCATTGCTCTGCCTGCTGCTGTTTCCGCTGGCGCAACTGGCCTTCGCCATCAACGACGCGCCG 
ATGCGCCCGCCGCTGGCGCTGGCGGCCTTTGGCGCGGGCCTGGCCTACCTCGGCGGCGGCTCGGTGTTCGGC 
TGA