ViewGene
Locus Name:
GeneID:
Location:

GeneID:5382
TrivialName: PA14_30240
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_30240
PAO1 Ortholog Locus:PA2619
Sequence Length:219
Protein Length:72
Start: 2619908
Stop: 2619690
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06007.1|AE004690_7 (AE004690) initiation factor [Pseudomonas aeruginosa PAO1]
Identities = 72/72 (100%), Positives = 72/72 (100%)
Sequence:
ATGTCGAAAGAAGACAGCTTCGAAATGGAAGGTACTGTCGTCGACACCCTGCCCAACACCATGTTCCGTGTG
GAGTTGGAAAATGGGCACGTCGTCACCGCGCACATCTCCGGCAAAATGCGCAAGAACTACATCCGCATCCTC
ACCGGCGACAAGGTTCGCGTGGAACTGACGCCCTACGACCTGAGCAAGGGCCGCATCACCTACCGCGCCCGC
TGA
Translation:
MSKEDSFEMEGTVVDTLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVRVELTPYDLSKGRITYRAR
*
AnnotationID:5387GeneID:5382
AnnotatorUID: diggins
Modification Date/Time: 2005-03-07 13:01:17
Gene Name:infA
Confidence Code:2
GeneProduct:translation initiation factor IF-1
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0361
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69601.1|AE016593_9 (AE016788) translation initiation factor IF-1 [Pseudomonas putida
          KT2440]
          Length = 72

 Score =  146 bits (368), Expect = 3e-35
 Identities = 72/72 (100%), Positives = 72/72 (100%)

>gb|AAO56830.1| (AE016868) translation initiation factor IF-1 [Pseudomonas
          syringae pv. tomato str. DC3000]
          Length = 72

 Score =  144 bits (364), Expect = 9e-35
 Identities = 71/72 (98%), Positives = 71/72 (98%)

>gb|AAM86358.1|AE013884_5 (AE013884) protein chain initiation factor IF-1 [Yersinia pestis
          KIM]
          Length = 72

 Score =  132 bits (332), Expect = 4e-31
 Identities = 63/72 (87%), Positives = 69/72 (95%)






 
Structural Features:
COG0361, InfA, Translation initiation factor 1 (IF-1) 
[Translation, ribosomal structure and biogenesis]
CD-Length = 75 residues,  96.0% aligned
Score =  104 bits (262), Expect = 1e-24
Identities = 51/72 (70%), Positives = 57/72 (79%)






   
Genomic Context:






   
Comment:


















    ReferenceID:10762




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27911




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33183




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5382_cdd.html


    		




 
URL:

















    ReferenceID:34554




  
Author/Investigator(s):
        Sands JF, Cummings HS, Sacerdot C, Dondon L, Grunberg-Manago M, Hershey JW.





  
Title:
        Cloning and mapping of infA, the gene for protein synthesis initiation factor IF1.




  
PubMed:
        3037488


MedLine:
        




    
Source:
Nucleic Acids Res. 1987 Jul 10;15(13):5157-68.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=3037488

















    ReferenceID:34555




  
Author/Investigator(s):
        Koivula T, Hemila H.





  
Title:
        Nucleotide sequence of a Lactococcus lactis gene cluster encoding adenylate kinase, initiation factor 1 and ribosomal proteins.




  
PubMed:
        1783905


MedLine:
        




    
Source:
J Gen Microbiol. 1991 Nov;137 ( Pt 11):2595-600.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=1783905









           
Homologs By Global Alignment 

           

       



     
Gene ID:5382
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7774
                           PA2619_tr
                           translation of PA2619
                           72
                           99.99
                           99.99
                           0
                           368.0
     

     
     
196264
                           gb|AAN69601.1|AE016593_9
                           (AE016788) translation initiation factor IF-1 [Pseudomonas putida KT2440]
                           72
                           99.99
                           99.99
                           0
                           368.0
     

     
     
196265
                           gb|AAG06007.1|AE004690_7
                           (AE004690) initiation factor [Pseudomonas aeruginosa PAO1]
                           72
                           99.99
                           99.99
                           0
                           368.0
     

     
     
196266
                           gb|AAO56830.1|
                           (AE016868) translation initiation factor IF-1 [Pseudomonas syringae pv. tomato str. DC3000]
                           72
                           98.61
                           98.61
                           0
                           364.0
     

     
     
196273
                           dbj|BAC59279.1|
                           (AP005076) initiation factor IF-1 [Vibrio parahaemolyticus]
                           72
                           87.50
                           94.44
                           0
                           330.0
     

     






      

          
GC ORFID: 48384How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2619Glimmer Score: 

          
Start: 2334018Stop: 2334236

          
Length: 219


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2619 translation of PA2619Homolog Bit Score 146.0

          
Other Homologs:  psyr_15may02_Scaffold17_revised_gene2751 (ORF: BLASTX 146.0)

          
GC ORF Sequence

           
ATGTCGAAAGAAGACAGCTTCGAAATGGAAGGTACTGTCGTCGACACCCTGCCCAACACCATGTTCCGTGTG 
GAGTTGGAAAATGGGCACGTCGTCACCGCGCACATCTCCGGCAAAATGCGCAAGAACTACATCCGCATCCTC 
ACCGGCGACAAGGTTCGCGTGGAACTGACGCCCTACGACCTGAGCAAGGGCCGCATCACCTACCGCGCCCGC 
TGA