ViewGene
Locus Name:
GeneID:
Location:

GeneID:538
TrivialName: PA14_61720
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_61720
PAO1 Ortholog Locus:PA4667
Sequence Length:1773
Protein Length:590
Start: 5506940
Stop: 5508712
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08054.1|AE004880_10 (AE004880) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 587/590 (99%), Positives = 587/590 (99%)
Sequence:
ATGATGGCGCCACCCTCGCAGGTTCAAGGCCGGCTTTCTTCCTCTATGAACAAATCCCTTGCGCTGCTGACC
GTCACGCTGCTGCTCGGCGGCTGCCAGTCACTTATCCACAAGACTCCCGATGGCACCCCGCCGGTGGAAGAC
ACCGCGGTCGAGACCAAGGCCAAGCCGGAAAAGTACGGCTCCTTCAGCGAGGACAGCCTGTATTCGCTGCTG
GTGGCCGAACTGGCCGGGCAGCGCAACCGCTTCGACATCGCCCTGAGCAACTATGTGGTGCAGGCGCAGAAA
ACCCGCGACCCCGGAGTTTCCGAGCGCGCCTTCCGCATCGCCGAATACCTCGGCGCCGACCAGGAAGCCCTC
GACACCTCCCTGCTCTGGGCGCGCAGCGCGCCGGACAACCTCGATGCCCAACGCGCCGCCGCGATCCAGTTG
GCCCGCGCCGGGCGCTACGAGGAGTCCATGGTGTACATGGAGAAGGTTCTCAACGGCCAGGGCGACACGCAC
TTCGACTTCCTCGCCCTGTCTGCCGCGGAGACCGACCCGGATACCCGCACCGGCCTGCTGCAGAGCTTCGAC
CACCTGTTGAAGAAATACCCGAACAACGGCCAGTTGCTGTTCGGCAAGGCCCTGCTGCTGCAACAGGACGGC
CGCCCGGACGAAGCCCTGACCCTGCTCGAGGACAACTCCGCAAGCCGCCACGAAGTCGCCCCGCTGCTGCTC
CGCTCCCGCCTGTTGCAGAGCATGAAGCGCAGCGACGAGGCCCTGCCGCTGCTCAAGGCCGGGATCAAGGAA
CACCCGGACGACAAGCGCGTGCGCCTCGCCTACGCGCGCCTGCTGGTGGAGCAGAACCGCCTGGATGACGCC
AAGGCCGAGTTCGCCGGACTGGTCCAGCAATTCCCCGACGACGACGACCTGCGTTTCTCCCTGGCGCTGGTC
TGCCTGGAAGCCCAGGCCTGGGACGAAGCCAGGATCTACCTGGAAGAACTGGTCGAGCGCGACAGCCACGTC
GACGCCGCCCACTTCAACCTCGGCCGCCTCGCCGAGGAACAGAAGGACACCGCGCGCGCCCTCGACGAGTAC
GCCCAGGTCGGCCCGGGCAATGACTTCCTCCCGGCGCAACTGCGCCAGACCGACGTCCTGCTCAAGGCCGGT
CGCGTCGACGAAGCCGCCCAGCGCCTGGACAAGGCGCGCAGCGAGCAACCCGACTACGCCATCCAGCTGTAC
CTGATCGAAGCCGAGGCGCTGTCCAACAACGACCAGCAGGAAAAGGCCTGGCAGGCCATCCAGGAGGGTCTG
AAGCAGTACCCGGAGGACCTCAACCTGCTCTACACCCGCTCGATGCTGGCGGAGAAGCGTAACGACCTGGCG
CAGATGGAAAAGGACCTGCGCTTCGTCATCGCCCGCGAGCCGGACAACGCCATGGCCCTCAACGCCCTCGGC
TACACCCTGGCCGACCGCACTACCCGCTACACCGAGGCGCGCGAGCTGATCCTCAAGGCGCACAAGCTGAAC
CCGGACGACCCGGCGATCCTCGACAGCATGGGCTGGATCAACTATCGCCAGGGCAAGCTGGCGGACGCCGAG
CGCTACCTGCGCCAGGCGCTGCAGCGCTACCCCGACCACGAGGTCGCCGCGCACCTGGGCGAAGTCCTCTGG
GCCCAGGGGCGCCAAGACGACGCCCGGGCCATCTGGCGCGAATACCTCGACAAGCAGCCCGACAGCGACGTG
CTGCGCCGCACCATCAAGCGCCTGACCGGCGCCGAGACTCCTTGA
Translation:
MMAPPSQVQGRLSSSMNKSLALLTVTLLLGGCQSLIHKTPDGTPPVEDTAVETKAKPEKYGSFSEDSLYSLL
VAELAGQRNRFDIALSNYVVQAQKTRDPGVSERAFRIAEYLGADQEALDTSLLWARSAPDNLDAQRAAAIQL
ARAGRYEESMVYMEKVLNGQGDTHFDFLALSAAETDPDTRTGLLQSFDHLLKKYPNNGQLLFGKALLLQQDG
RPDEALTLLEDNSASRHEVAPLLLRSRLLQSMKRSDEALPLLKAGIKEHPDDKRVRLAYARLLVEQNRLDDA
KAEFAGLVQQFPDDDDLRFSLALVCLEAQAWDEARIYLEELVERDSHVDAAHFNLGRLAEEQKDTARALDEY
AQVGPGNDFLPAQLRQTDVLLKAGRVDEAAQRLDKARSEQPDYAIQLYLIEAEALSNNDQQEKAWQAIQEGL
KQYPEDLNLLYTRSMLAEKRNDLAQMEKDLRFVIAREPDNAMALNALGYTLADRTTRYTEARELILKAHKLN
PDDPAILDSMGWINYRQGKLADAERYLRQALQRYPDHEVAAHLGEVLWAQGRQDDARAIWREYLDKQPDSDV
LRRTIKRLTGAETP*
AnnotationID:547GeneID:538
AnnotatorUID: diggins
Modification Date/Time: 2005-03-08 07:07:37
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4667
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO54636.1| (AE016859) TPR domain protein [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 575

 Score =  811 bits (2096), Expect = 0.0
 Identities = 397/573 (69%), Positives = 483/573 (84%)

>gb|AAN66350.1|AE016263_7 (AE016776) TPR domain protein [Pseudomonas putida KT2440]
          Length = 573

 Score =  768 bits (1982), Expect = 0.0
 Identities = 387/574 (67%), Positives = 463/574 (80%), Gaps = 2/574 (0%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:1079




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18221




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37608




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:538_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:538
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
936
                           PA4667_tr
                           translation of PA4667
                           590
                           99.49
                           99.49
                           0
                           2980.0
     

     
     
37763
                           gb|AAG08054.1|AE004880_10
                           (AE004880) hypothetical protein PA4667 [Pseudomonas aeruginosa PAO1]
                           590
                           99.49
                           99.49
                           0
                           2980.0
     

     
     
37764
                           emb|CAA57572.1|
                           (X82071) hypothetical protein [Pseudomonas aeruginosa]
                           591
                           96.78
                           96.78
                           16
                           2897.0
     

     
     
37765
                           gb|AAO54636.1|
                           (AE016859) TPR domain protein [Pseudomonas syringae pv. tomato str. DC3000]
                           593
                           67.45
                           81.95
                           21
                           2094.0
     

     
     
37766
                           gb|AAN66350.1|AE016263_7
                           (AE016776) TPR domain protein [Pseudomonas putida KT2440]
                           590
                           65.59
                           78.47
                           17
                           1981.0
     

     






      

          
GC ORFID: 43540How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4667Glimmer Score: 

          
Start: 4770620Stop: 4772392

          
Length: 1773


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4667 translation of PA4667Homolog Bit Score 1152.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene5092 (ORF: BLASTX 820.0), t_PA4667 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATGGCGCCACCCTCGCAGGTTCAAGGCCGGCTTTCTTCCTCTATGAACAAATCCCTTGCGCTGCTGACC 
GTCACGCTGCTGCTCGGCGGCTGCCAGTCACTTATCCACAAGACTCCCGATGGCACCCCGCCGGTGGAAGAC 
ACCGCGGTCGAGACCAAGGCCAAGCCGGAAAAGTACGGCTCCTTCAGCGAGGACAGCCTGTATTCGCTGCTG 
GTGGCCGAACTGGCCGGGCAGCGCAACCGCTTCGACATCGCCCTGAGCAACTATGTGGTGCAGGCGCAGAAA 
ACCCGCGACCCCGGAGTTTCCGAGCGCGCCTTCCGCATCGCCGAATACCTCGGCGCCGACCAGGAAGCCCTC 
GACACCTCCCTGCTCTGGGCGCGCAGCGCGCCGGACAACCTCGATGCCCAACGCGCCGCCGCGATCCAGTTG 
GCCCGCGCCGGGCGCTACGAGGAGTCCATGGTGTACATGGAGAAGGTTCTCAACGGCCAGGGCGACACGCAC 
TTCGACTTCCTCGCCCTGTCTGCCGCGGAGACCGACCCGGATACCCGCACCGGCCTGCTGCAGAGCTTCGAC 
CACCTGTTGAAGAAATACCCGAACAACGGCCAGTTGCTGTTCGGCAAGGCCCTGCTGCTGCAACAGGACGGC 
CGCCCGGACGAAGCCCTGACCCTGCTCGAGGACAACTCCGCAAGCCGCCACGAAGTCGCCCCGCTGCTGCTC 
CGCTCCCGCCTGTTGCAGAGCATGAAGCGCAGCGACGAGGCCCTGCCGCTGCTCAAGGCCGGGATCAAGGAA 
CACCCGGACGACAAGCGCGTGCGCCTCGCCTACGCGCGCCTGCTGGTGGAGCAGAACCGCCTGGATGACGCC 
AAGGCCGAGTTCGCCGGACTGGTCCAGCAATTCCCCGACGACGACGACCTGCGTTTCTCCCTGGCGCTGGTC 
TGCCTGGAAGCCCAGGCCTGGGACGAAGCCAGGATCTACCTGGAAGAACTGGTCGAGCGCGACAGCCACGTC 
GACGCCGCCCACTTCAACCTCGGCCGCCTCGCCGAGGAACAGAAGGACACCGCGCGCGCCCTCGACGAGTAC 
GCCCAGGTCGGCCCGGGCAATGACTTCCTCCCGGCGCAACTGCGCCAGACCGACGTCCTGCTCAAGGCCGGT 
CGCGTCGACGAAGCCGCCCAGCGCCTGGACAAGGCGCGCAGCGAGCAACCCGACTACGCCATCCAGCTGTAC 
CTGATCGAAGCCGAGGCGCTGTCCAACAACGACCAGCAGGAAAAGGCCTGGCAGGCCATCCAGGAGGGTCTG 
AAGCAGTACCCGGAGGACCTCAACCTGCTCTACACCCGCTCGATGCTGGCGGAGAAGCGTAACGACCTGGCG 
CAGATGGAAAAGGACCTGCGCTTCGTCATCGCCCGCGAGCCGGACAACGCCATGGCCCTCAACGCCCTCGGC 
TACACCCTGGCCGACCGCACTACCCGCTACACCGAGGCGCGCGAGCTGATCCTCAAGGCGCACAAGCTGAAC 
CCGGACGACCCGGCGATCCTCGACAGCATGGGCTGGATCAACTATCGCCAGGGCAAGCTGGCGGACGCCGAG 
CGCTACCTGCGCCAGGCGCTGCAGCGCTACCCCGACCACGAGGTCGCCGCGCACCTGGGCGAAGTCCTCTGG 
GCCCAGGGGCGCCAAGACGACGCCCGGGCCATCTGGCGCGAATACCTCGACAAGCAGCCCGACAGCGACGTG 
CTGCGCCGCACCATCAAGCGCCTGACCGGCGCCGAGACTCCTTGA