ViewGene
Locus Name:
GeneID:
Location:

GeneID:5379
TrivialName: PA14_60930
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_60930
PAO1 Ortholog Locus:PA4605
Sequence Length:204
Protein Length:67
Start: 5436196
Stop: 5435993
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07993.1|AE004874_6 (AE004874) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 67/67 (100%), Positives = 67/67 (100%)
Sequence:
ATGTTCAACGACCTCAGCCGCATGGGCAAATACCTGGGCCAGGCCGCCCGGATGCTGGTCGGCATGCCCGAC
TACGACACCTATGTCGAGCACATGCGCAACAAGCACCCGGACAAGCCGGTGATGACCTACGAGGAGTTCTTC
CGCGAGCGCCAGGAGGCGCGCTACGGTGGCGGCAAGGGTCGGCCGATCCGCTGCTGCTGA
Translation:
MFNDLSRMGKYLGQAARMLVGMPDYDTYVEHMRNKHPDKPVMTYEEFFRERQEARYGGGKGRPIRCC*
AnnotationID:5384GeneID:5379
AnnotatorUID: diggins
Modification Date/Time: 2005-05-06 07:07:39
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4605
Cell Localization Confidence Code:4
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2879,pfam04328
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAL23349.1| (AE008913) putative cytoplasmic protein [Salmonella typhimurium
          LT2]
          Length = 67

 Score =  105 bits (262), Expect = 6e-23
 Identities = 46/67 (68%), Positives = 54/67 (80%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:10757




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27905




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31618




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5379_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5379
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7772
                           PA4605_tr
                           translation of PA4605
                           67
                           99.99
                           99.99
                           0
                           372.0
     

     
     
196241
                           gb|AAG07993.1|AE004874_6
                           (AE004874) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           67
                           99.99
                           99.99
                           0
                           372.0
     

     
     
196242
                           gb|AAO58083.1|
                           (AE016872) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           67
                           82.08
                           92.53
                           2
                           302.0
     

     
     
196243
                           gb|AAN70213.1|AE016660_10
                           (AE016791) conserved hypothetical protein [Pseudomonas putida KT2440]
                           67
                           76.11
                           85.07
                           2
                           284.0
     

     
     
196246
                           emb|CAD03376.1|
                           (AL627284) conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi]
                           68
                           72.05
                           83.82
                           2
                           266.0
     

     






      

          
GC ORFID: 48381How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4605Glimmer Score: 

          
Start: 4699876Stop: 4699673

          
Length: 204


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4605 translation of PA4605Homolog Bit Score 147.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5404 (ORF: BLASTX 120.0), t_PA4605 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTTCAACGACCTCAGCCGCATGGGCAAATACCTGGGCCAGGCCGCCCGGATGCTGGTCGGCATGCCCGAC 
TACGACACCTATGTCGAGCACATGCGCAACAAGCACCCGGACAAGCCGGTGATGACCTACGAGGAGTTCTTC 
CGCGAGCGCCAGGAGGCGCGCTACGGTGGCGGCAAGGGTCGGCCGATCCGCTGCTGCTGA