ViewGene
Locus Name:
GeneID:
Location:

GeneID:5377
TrivialName: PA14_58790
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_58790
PAO1 Ortholog Locus:PA4530
Sequence Length:201
Protein Length:66
Start: 5238683
Stop: 5238883
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07918.1|AE004867_4 (AE004867) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 66/66 (100%), Positives = 66/66 (100%)
Sequence:
ATGAGCCAGCCCCTGACCGTGGAGTGCCCGACCTGCGGCGCGCCCGTCGAATGGAAAAGCGACAACAAGTAC
CGCCCCTTCTGCTCCGACCGCTGCAAGCTGATCGATCTCGGCGCCTGGGCCGCCGAGGAACATGCGATCCCC
GGCGACACCCTGGAAGACGATATCTTCTCCGCCGACCTGCCGCCTCGCGAGCATTGA
Translation:
MSQPLTVECPTCGAPVEWKSDNKYRPFCSDRCKLIDLGAWAAEEHAIPGDTLEDDIFSADLPPREH*
AnnotationID:5382GeneID:5377
AnnotatorUID: diggins
Modification Date/Time: 2005-05-04 17:05:18
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4530
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:10754




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27901




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31575




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5377_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5377
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7771
                           PA4530_tr
                           translation of PA4530
                           66
                           99.99
                           99.99
                           0
                           373.0
     

     
     
196238
                           gb|AAG07918.1|AE004867_4
                           (AE004867) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           66
                           99.99
                           99.99
                           0
                           373.0
     

     
     
196239
                           gb|AAN66255.1|AE016254_2
                           (AE016776) conserved hypothetical protein [Pseudomonas putida KT2440]
                           67
                           71.64
                           80.59
                           2
                           271.0
     

     
     
196240
                           gb|AAC17879.1|
                           (AF062531) unknown [Pseudomonas putida GB-1]
                           67
                           70.14
                           80.59
                           2
                           265.0
     

     






      

          
GC ORFID: 48379How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4530Glimmer Score: 

          
Start: 4502362Stop: 4502562

          
Length: 201


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4530 translation of PA4530Homolog Bit Score 148.0

          
Other Homologs:  t_PA4530 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCCAGCCCCTGACCGTGGAGTGCCCGACCTGCGGCGCGCCCGTCGAATGGAAAAGCGACAACAAGTAC 
CGCCCCTTCTGCTCCGACCGCTGCAAGCTGATCGATCTCGGCGCCTGGGCCGCCGAGGAACATGCGATCCCC 
GGCGACACCCTGGAAGACGATATCTTCTCCGCCGACCTGCCGCCTCGCGAGCATTGA