ViewGene

Locus Name:
GeneID:
Location:

GeneID:5376
TrivialName: PA14_48940
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_48940
PAO1 Ortholog Locus:PA0723
Sequence Length:249
Protein Length:82
Start: 4351099
Stop: 4350851
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04112.1|AE004507_11 (AE004507) coat protein B of bacteriophage Pf1) [Pseudomonas aeruginosa PAO1]
Identities = 76/82 (92%), Positives = 81/82 (98%)
Sequence:
ATGAAAGCAATGAAGCAACGCATCGCCAAGTTCAGCCCGGTCGCCTCGTTCCGCAACCTGTGCATCGCCGGT
TCCGTCACTGCCGCGACTTCGCTGCCGGCCTTCGCCGGGGTGATCGACACCAGCGCGGTCGAGGCCGCAATC
ACCGAGGGCAAGGGTGATATGTCCAGCATCGGCGGCTATATCGTCGGCGCCCTGGTGATTCTGGCCGTCGCT
GGCCTGGTCTACAGCATGTTGCGCAAGGCGTAA
Translation:
MKAMKQRIAKFSPVASFRNLCIAGSVTAATSLPAFAGVIDTSAVEAAITEGKGDMSSIGGYIVGALVILAVA
GLVYSMLRKA*
AnnotationID:5381GeneID:5376
AnnotatorUID: danlee
Modification Date/Time: 2006-04-12 17:05:28
Gene Name:coaB
Confidence Code:1
GeneProduct:coat protein B of bacteriophage Pf1
Cell Localization:()
Synonyms:PA0723
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(22) Related to phage, transposon, or plasmid
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
100% identical to coat protein B [bacteriophage Pf1] 

>gb|AAG04112.1|AE004507_11 (AE004507) coat protein B of bacteriophage Pf1) [Pseudomonas aeruginosa PAO1] 
Length = 82
 Score =  148 bits (374), Expect = 6e-36
 Identities = 76/82 (92%), Positives
Structural Features:
Two predicted transmembrane domains
Genomic Context:
Cluster of genes from bacteriophage Pf1 

Comment:
ReferenceID:10752
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:27899
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:5376

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7770 PA0723_tr translation of PA0723 82 92.68 98.78 0 374.0
196237 gb|AAG04112.1|AE004507_11 (AE004507) coat protein B of bacteriophage Pf1) [Pseudomonas aeruginosa PAO1] 82 92.68 98.78 0 374.0
GC ORFID: 48378How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0723Glimmer Score:
Start: 602809Stop: 603057
Length: 249
Start Codon: ATGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: t_PA0723 translation of PA0723Homolog Bit Score 148.0
Other Homologs: t_PA0723 (ORF: GLIMMER)
GC ORF Sequence
ATGAAAGCAATGAAGCAACGCATCGCCAAGTTCAGCCCGGTCGCCTCGTTCCGCAACCTGTGCATCGCCGGT
TCCGTCACTGCCGCGACTTCGCTGCCGGCCTTCGCCGGGGTGATCGACACCAGCGCGGTCGAGGCCGCAATC
ACCGAGGGCAAGGGTGATATGTCCAGCATCGGCGGCTATATCGTCGGCGCCCTGGTGATTCTGGCCGTCGCT
GGCCTGGTCTACAGCATGTTGCGCAAGGCGTAA