ViewGene
Locus Name:
GeneID:
Location:

GeneID:5375
TrivialName: PA14_01520
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_01520
PAO1 Ortholog Locus:PA0125
Sequence Length:228
Protein Length:75
Start: 141986
Stop: 141759
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03515.1|AE004450_10 (AE004450) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 74/75 (98%), Positives = 74/75 (98%)
Sequence:
ATGAGCACCGTAGTCTCGTTCCGCGCCGATGACGCCCTGGTCGCGGCCCTCGACGAACTGGCCCGCGCCACC
CACCGCGACCGCCCGTATCACCTGCGGCAGGCGCTCGCGCAGTACCTGGAAAGGCAGCAGTGGCAGGTCGCT
GCCATCGATGAAGGCTTGGCCGATGCCAATGCCGGTCGCCTGCTGGAGCACGCCGAGATCGAGAAGCGCTGG
GGGCTGCAATGA
Translation:
MSTVVSFRADDALVAALDELARATHRDRPYHLRQALAQYLERQQWQVAAIDEGLADANAGRLLEHAEIEKRW
GLQ*
AnnotationID:5380GeneID:5375
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 19:07:19
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:PA0125
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3905
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG3905, COG3905, Predicted transcriptional regulator [Transcription]
CD-Length = 83 residues,  84.3% aligned
Score = 75.4 bits (185), Expect = 1e-15
Identities = 35/70 (50%), Positives = 45/70 (64%)







   
Genomic Context:






   
Comment:


















    ReferenceID:10750




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27897




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33496




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5375_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5375
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7769
                           PA0125_tr
                           translation of PA0125
                           75
                           98.66
                           98.66
                           0
                           376.0
     

     
     
196236
                           gb|AAG03515.1|AE004450_10
                           (AE004450) hypothetical protein PA0125 [Pseudomonas aeruginosa PAO1]
                           75
                           98.66
                           98.66
                           0
                           376.0
     

     






      

          
GC ORFID: 48377How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0125Glimmer Score: 

          
Start: 5943325Stop: 5943098

          
Length: 228


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0125 translation of PA0125Homolog Bit Score 149.0

          
Other Homologs:  t_PA0125 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCACCGTAGTCTCGTTCCGCGCCGATGACGCCCTGGTCGCGGCCCTCGACGAACTGGCCCGCGCCACC 
CACCGCGACCGCCCGTATCACCTGCGGCAGGCGCTCGCGCAGTACCTGGAAAGGCAGCAGTGGCAGGTCGCT 
GCCATCGATGAAGGCTTGGCCGATGCCAATGCCGGTCGCCTGCTGGAGCACGCCGAGATCGAGAAGCGCTGG 
GGGCTGCAATGA