ViewGene
Locus Name:
GeneID:
Location:

GeneID:5374
TrivialName: PA14_00480
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_00480
PAO1 Ortholog Locus:PA0039
Sequence Length:228
Protein Length:75
Start: 40610
Stop: 40837
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03429.1|AE004443_7 (AE004443) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 75/75 (100%), Positives = 75/75 (100%)
Sequence:
GTGTTCATGAAGAAGTTGATGTTGGCAGTCGGCCTGTTTGCCGTGGCGGGCAGCGCATTCGCCGCCAAGCCC
TGTGAGGAACTGAAAGCCGAGATCGATGCGAAGATCAAGGCCAACGGCGTTCCTGCCTACACCCTGGAAATC
GTCGACAAGGGCAGCGTCACCGACAAGAAGGTAGTCGGCACCTGCGACGGCGGCACCAAGGAAATCGTCTAC
CAGCGCGGCTGA
Translation:
MFMKKLMLAVGLFAVAGSAFAAKPCEELKAEIDAKIKANGVPAYTLEIVDKGSVTDKKVVGTCDGGTKEIVY
QRG*
AnnotationID:5379GeneID:5374
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 14:02:32
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0039
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:15326




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27894




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5374
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7768
                           PA0039_tr
                           translation of PA0039
                           75
                           99.99
                           99.99
                           0
                           377.0
     

     
     
196234
                           gb|AAG03429.1|AE004443_7
                           (AE004443) hypothetical protein PA0039 [Pseudomonas aeruginosa PAO1]
                           75
                           98.66
                           99.99
                           0
                           374.0
     

     
     
196235
                           gb|AAO53708.1|
                           (AE016856) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           76
                           65.78
                           85.52
                           3
                           268.0
     

     






      

          
GC ORFID: 48376How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0039Glimmer Score: 

          
Start: 5841947Stop: 5842174

          
Length: 228


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0039 translation of PA0039Homolog Bit Score 149.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene2990 (ORF: BLASTX 110.0), t_PA0039 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGTTCATGAAGAAGTTGATGTTGGCAGTCGGCCTGTTTGCCGTGGCGGGCAGCGCATTCGCCGCCAAGCCC 
TGTGAGGAACTGAAAGCCGAGATCGATGCGAAGATCAAGGCCAACGGCGTTCCTGCCTACACCCTGGAAATC 
GTCGACAAGGGCAGCGTCACCGACAAGAAGGTAGTCGGCACCTGCGACGGCGGCACCAAGGAAATCGTCTAC 
CAGCGCGGCTGA