ViewGene
Locus Name:
GeneID:
Location:

GeneID:5373
TrivialName: PA14_63820
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_63820
PAO1 Ortholog Locus:PA4826
Sequence Length:219
Protein Length:72
Start: 5689209
Stop: 5688991
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08211.1|AE004896_1 (AE004896) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 71/72 (98%), Positives = 72/72 (100%)
Sequence:
ATGAACTTCGAGAATTCGGTATCCCCCGGCGTATCCGCCTTCGTGGCGAAGATGCGCGTGCGCGCCGCGCAG
TCCCCCGGCGCGATCCTTCCCGGCCACGGCCATCCTGCGAGCCTCGCCTGGCGTGTCGACCCGGCCGGCGGT
CGCCTGGAGTATCGCCGCCTGGAGACGCAGATCGAAGAGAACCCTGAGAGCGGTCGCCGCCCGATGCGCGGC
TGA
Translation:
MNFENSVSPGVSAFVAKMRVRAAQSPGAILPGHGHPASLAWRVDPAGGRLEYRRLETQIEENPESGRRPMRG
*
AnnotationID:5378GeneID:5373
AnnotatorUID: diggins
Modification Date/Time: 2005-03-11 06:06:13
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA4826
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:10746




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27892




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5373
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7767
                           PA4826_tr
                           translation of PA4826
                           72
                           98.61
                           99.99
                           0
                           376.0
     

     
     
196233
                           gb|AAG08211.1|AE004896_1
                           (AE004896) hypothetical protein PA4826 [Pseudomonas aeruginosa PAO1]
                           72
                           98.61
                           99.99
                           0
                           376.0
     

     






      

          
GC ORFID: 48375How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4826Glimmer Score: 

          
Start: 4952889Stop: 4952671

          
Length: 219


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4826 translation of PA4826Homolog Bit Score 149.0

          
Other Homologs:  t_PA4826 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACTTCGAGAATTCGGTATCCCCCGGCGTATCCGCCTTCGTGGCGAAGATGCGCGTGCGCGCCGCGCAG 
TCCCCCGGCGCGATCCTTCCCGGCCACGGCCATCCTGCGAGCCTCGCCTGGCGTGTCGACCCGGCCGGCGGT 
CGCCTGGAGTATCGCCGCCTGGAGACGCAGATCGAAGAGAACCCTGAGAGCGGTCGCCGCCCGATGCGCGGC 
TGA