ViewGene

Locus Name:
GeneID:
Location:

GeneID:5372
TrivialName: PA14_25670
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_25670
PAO1 Ortholog Locus:PA2966
Sequence Length:237
Protein Length:78
Start: 2244161
Stop: 2244397
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06354.1|AE004722_10 (AE004722) acyl carrier protein [Pseudomonas aeruginosa PAO1]
Identities = 78/78 (100%), Positives = 78/78 (100%)
Sequence:
ATGAGCACCATCGAAGAACGCGTTAAGAAGATCGTCGCTGAACAACTCGGCGTGAAGGAAGAAGAAGTCACC
AACAGCGCTTCCTTCGTCGAAGACCTGGGCGCCGACTCCCTTGACACCGTCGAGCTGGTGATGGCTCTGGAA
GAGGAATTCGAGACCGAAATCCCTGACGAGAAAGCTGAAAAGATCACCACCGTTCAGGAAGCCATCGACTAC
ATCGTTGCTCACCAGCAATAA
Translation:
MSTIEERVKKIVAEQLGVKEEEVTNSASFVEDLGADSLDTVELVMALEEEFETEIPDEKAEKITTVQEAIDY
IVAHQQ*
AnnotationID:5377GeneID:5372
AnnotatorUID: diggins
Modification Date/Time: 2004-11-28 10:10:30
Gene Name:acpP
Confidence Code:1
GeneProduct:acyl carrier protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0236
Secondary Functional Category(ies):Secondary metabolites biosynthesis, transport, and catabolism
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO57299.1| (AE016869) acyl carrier protein [Pseudomonas syringae pv. tomato
          str. DC3000]
          Length = 78

 Score =  134 bits (337), Expect = 1e-31
 Identities = 69/77 (89%), Positives = 73/77 (94%)

>gb|AAL20125.1| (AE008752) acyl carrier protein [Salmonella typhimurium LT2]
          Length = 78

 Score =  134 bits (336), Expect = 1e-31
 Identities = 68/77 (88%), Positives = 73/77 (94%)

>gb|AAN79834.1|AE016759_108 (AE016759) Acyl carrier protein [Escherichia coli CFT073]
          Length = 78

 Score =  134 bits (336), Expect = 1e-31
 Identities = 68/77 (88%), Positives = 73/77 (94%)

Structural Features:
COG0236, AcpP, Acyl carrier protein 
[Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Genomic Context:
Comment:
ReferenceID:10744
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:27890
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36051
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:5372_cdd.html
URL:
ReferenceID:36439
Author/Investigator(s): Shen Z, Byers DM.
Title: Isolation of Vibrio harveyi acyl carrier protein and the fabG, acpP, and fabF genes involved in fatty acid biosynthesis.
PubMed: 8550484
MedLine:
Source:
J Bacteriol. 1996 Jan;178(2):571-3.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=8550484
ReferenceID:36441
Author/Investigator(s): Kutchma AJ, Hoang TT, Schweizer HP.
Title: Characterization of a Pseudomonas aeruginosa fatty acid biosynthetic gene cluster: purification of acyl carrier protein (ACP) and malonyl-coenzyme A:ACP transacylase (FabD).
PubMed: 10464226
MedLine:
Source:
J Bacteriol. 1999 Sep;181(17):5498-504.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10464226
Homologs By Global Alignment
Gene ID:5372

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7766 PA2966_tr translation of PA2966 78 99.99 99.99 0 376.0
196184 gb|AAG06354.1|AE004722_10 (AE004722) acyl carrier protein [Pseudomonas aeruginosa PAO1] 78 99.99 99.99 0 376.0
196185 gb|AAB94392.1| (U91631) acyl carrier protein [Pseudomonas aeruginosa] 78 98.71 98.71 0 366.0
196186 gb|AAO57299.1| (AE016869) acyl carrier protein [Pseudomonas syringae pv. tomato str. DC3000] 78 88.46 93.58 0 336.0
196198 gb|AAN67533.1|AE016382_1 (AE016781) acyl carrier protein [Pseudomonas putida KT2440] 78 88.46 92.30 0 332.0
GC ORFID: 48374How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2966Glimmer Score:
Start: 2709764Stop: 2709528
Length: 237
Start Codon: ATGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: t_PA2966 translation of PA2966Homolog Bit Score 149.0
Other Homologs: psyr_15may02_Scaffold16_revised_gene2609 (ORF: BLASTX 131.0), t_PA2966 (ORF: GLIMMER)
GC ORF Sequence
ATGAGCACCATCGAAGAACGCGTTAAGAAGATCGTCGCTGAACAACTCGGCGTGAAGGAAGAAGAAGTCACC
AACAGCGCTTCCTTCGTCGAAGACCTGGGCGCCGACTCCCTTGACACCGTCGAGCTGGTGATGGCTCTGGAA
GAGGAATTCGAGACCGAAATCCCTGACGAGAAAGCTGAAAAGATCACCACCGTTCAGGAAGCCATCGACTAC
ATCGTTGCTCACCAGCAATAA