ViewGene

Locus Name:
GeneID:
Location:

GeneID:5370
TrivialName: PA14_59030
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_59030
PAO1 Ortholog Locus:
Sequence Length:234
Protein Length:77
Start: 5258897
Stop: 5259130
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP84230.1| (AY273869) hypothetical protein RL105 [Pseudomonas aeruginosa]
Identities = 77/77 (100%), Positives = 77/77 (100%)
Sequence:
ATGCGTAGTTTCCTTCGCGGCGCCCGGGAAAGCGTTCGCCGGCTGGTGGCCTTCGCTCAAGCAGAAGGCTGG
AGCGTCGACCGCTCCGCAGGCGGCCACTTGAAGCTCAGCAAGATCGGCTGCGCCTCGATCTTCATTTCTTCC
ACGCCAAGCGACGCACGCGGCGAGCTCAATGCCCGCGCCCTGCTCCGTCGAGCCGACAGGCAGCGTTCCCTG
AACCAGGAGTCTTTCTGA
Translation:
MRSFLRGARESVRRLVAFAQAEGWSVDRSAGGHLKLSKIGCASIFISSTPSDARGELNARALLRRADRQRSL
NQESF*
AnnotationID:5375GeneID:5370
AnnotatorUID: diggins
Modification Date/Time: 2006-01-29 22:10:52
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:10740
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:27886
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:5370

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
196181 gb|AAP84230.1| (AY273869) hypothetical protein RL105 [Pseudomonas aeruginosa] 77 99.99 99.99 0 380.0
GC ORFID: 48372How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_RL105Glimmer Score:
Start: 4522576Stop: 4522809
Length: 234
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_RL105 77 Homolog: No significant similarity () translation of RL105Homolog Bit Score 150.0
Other Homologs:
GC ORF Sequence
ATGCGTAGTTTCCTTCGCGGCGCCCGGGAAAGCGTTCGCCGGCTGGTGGCCTTCGCTCAAGCAGAAGGCTGG
AGCGTCGACCGCTCCGCAGGCGGCCACTTGAAGCTCAGCAAGATCGGCTGCGCCTCGATCTTCATTTCTTCC
ACGCCAAGCGACGCACGCGGCGAGCTCAATGCCCGCGCCCTGCTCCGTCGAGCCGACAGGCAGCGTTCCCTG
AACCAGGAGTCTTTCTGA