ViewGene
Locus Name:
GeneID:
Location:

GeneID:537
TrivialName: PA14_53150
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_53150
PAO1 Ortholog Locus:PA0860
Sequence Length:1791
Protein Length:596
Start: 4713571
Stop: 4711781
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04249.1|AE004520_12 (AE004520) probable ATP-binding/permease fusion ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 595/596 (99%), Positives = 595/596 (99%)
Sequence:
ATGAGTGAGCGCGGAGACCGCCTGAGCTGGGCGGAGATTCGTCGACTCGCACTGCGCCACAAGAAAGCCCTG
TTGCTCGCCAACCTGGTGGCGGTGCTGGCCACCCTCTGCACCGTGCCGATCCCCTTGCTGCTGCCGTTGCTG
GTGGACGAAGTGCTGCTCGGCAAGGGCGACGGCGCGCTGCGTTTCATGGACCGCCTGTTGCCCGCCGACTGG
CAGGTGGCGTTCGGCTACATCGGCCTGATGCTGGCGGCGACCCTCCTGTTGCGGGGGGCGGCGCTGGTGTTC
AACGTGCTCCAGGCGAAGCTGTTCGCGCGGCTGTCCAAGGACATCGTCTACCGCATCCGCCTGCGTCTGATC
GAGCGCCTCCGGCATATCGCCCTGGGCGAATACGAAACCCTCGGCGGCGGTTCGATCAGCGCCCACCTGGTG
ACCGACCTGGACACCCTGGACAAGTTCGTCGGGGAAACCCTCAGCCGCTTCCTGGTCGCCTTGCTGACGCTG
CTCGGCACCGCCGCGATCCTGGTCTGGATGCACTGGCAGCTGGCCTTGCTGATCCTGCTGTTCAACCCGCTG
GTGATCTGGTCCACGGTACAACTGGGCAAGCGCGTCAAGCACCTCAAGAAGCTCGAGAACGACAGCACCGCG
CGCTTCACCCAGGCGCTCACCGAGACCCTCGAGGCGATCCAGGAAGTCCGCGCCGGCAATCGCCAGGGCTAT
TTCCTCGGCCGCCTCGGCCACCGCGCCCAGGAAGTCCGCGACTACGCCGTGGCCTCGCAATGGAAAAGCGAC
GCCGCCGGGCGCGCCAGCGGCCTGCTGTTCCAGTTCGGCATCGATGTGTTCCGCGCCGCGGCGATGCTTACC
GTGCTGCTCTCGGACCTGTCGATCGGCCAGATGCTCGCGGTGTTCAGCTACCTCTGGTTCATGATCGGTCCG
GTCGAACAGCTGCTCGGCCTGCAATACGCCTACTACGCCGCTGGCGGCGCGTTGCAGCGGATCAACGAGTTG
CTGGCGCGGGCCGACGAGCCGCGCTACCCGCCGCTGCGCGATCCGTTCGCCGGCCGCACGACCGTTGGCATC
GAGGTGCGCGGGCTGGATTTCGCCTACGGCGAGGACAAGGTCCTGGAGCAGTTGGACCTGAACATCGGCGCC
GGCGAGAAGGTTGCCCTGGTCGGCGCCAGCGGCGGCGGCAAGAGCACGCTGGTGCAACTGCTACTCGGCCTC
TACAGTGCGCAGCGCGGCAGCATCCGCTACGGCGGGGTGCCCCTGGAGGAAATCGGCCTGGACTGCGTGCGC
GAACATGTCGCGGTGGTCCTCCAGCATCCGGCGCTGTTCAACGACAGCGTGCGGGCCAACCTGACCATGGGC
CGCGAACGCAGCGACCAGGCCTGCTGGCGGGCGTTGGAGATCGCCCAGTTGGCCGACGGCGTGCGGCGCCTG
CCGCAGGGGCTGGACACCGTGGTCGGGCGTTCCGGGGTGCGCCTGTCGGGCGGTCAGCGGCAGCGCCTGGCG
ATCGCCCGGATGATCCTCGCCGAGCCCAAGGTGGTGATCCTCGACGAGGCCACCTCGGCCCTCGACGCCGCT
ACCGAGTACGCCCTGCACCAGGCGCTCGGCGACTTCCTCGAAGGCCGCACCACATTGATCGTGGCTCATCGG
CTGTCGGCGGTGAAGCAGGCCGACCGGGTCCTGGTCTTCGATGGCGGGCATATCGCCGAAGACGGCGACCAC
CAGCAACTGATCGCCGAAGGCGGCCTCTACGCCCGGCTCTACGGACATCTGCAACAGATGTGA
Translation:
MSERGDRLSWAEIRRLALRHKKALLLANLVAVLATLCTVPIPLLLPLLVDEVLLGKGDGALRFMDRLLPADW
QVAFGYIGLMLAATLLLRGAALVFNVLQAKLFARLSKDIVYRIRLRLIERLRHIALGEYETLGGGSISAHLV
TDLDTLDKFVGETLSRFLVALLTLLGTAAILVWMHWQLALLILLFNPLVIWSTVQLGKRVKHLKKLENDSTA
RFTQALTETLEAIQEVRAGNRQGYFLGRLGHRAQEVRDYAVASQWKSDAAGRASGLLFQFGIDVFRAAAMLT
VLLSDLSIGQMLAVFSYLWFMIGPVEQLLGLQYAYYAAGGALQRINELLARADEPRYPPLRDPFAGRTTVGI
EVRGLDFAYGEDKVLEQLDLNIGAGEKVALVGASGGGKSTLVQLLLGLYSAQRGSIRYGGVPLEEIGLDCVR
EHVAVVLQHPALFNDSVRANLTMGRERSDQACWRALEIAQLADGVRRLPQGLDTVVGRSGVRLSGGQRQRLA
IARMILAEPKVVILDEATSALDAATEYALHQALGDFLEGRTTLIVAHRLSAVKQADRVLVFDGGHIAEDGDH
QQLIAEGGLYARLYGHLQQM*
AnnotationID:546GeneID:537
AnnotatorUID: danlee
Modification Date/Time: 2004-04-30 18:06:50
Gene Name:
Confidence Code:3
GeneProduct:probable ATP-binding/permease fusion ABC transporter
Cell Localization:()
Synonyms:PA0860
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1132, COG2274, KOG0058
Secondary Functional Category(ies):Membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG1132, MdlB, ABC-type multidrug transport system, ATPase and... Score: 371, 3e-103
COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, con... Score: 330, 5e-91
KOG0058, Peptide exporter, ABC superfamily. Score: 315, 2e-86






   
Genomic Context:






   
Comment:


















    ReferenceID:1077




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18219




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:537
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
935
                           PA0860_tr
                           translation of PA0860
                           596
                           99.83
                           99.83
                           0
                           2980.0
     

     
     
37739
                           gb|AAG04249.1|AE004520_12
                           (AE004520) probable ATP-binding/permease fusion ABC transporter [Pseudomonas aeruginosa PAO1]
                           596
                           99.83
                           99.83
                           0
                           2980.0
     

     
     
37740
                           gb|AAN67380.1|AE016364_5
                           (AE016780) ABC transporter, ATP-binding protein [Pseudomonas putida KT2440]
                           610
                           80.32
                           88.03
                           14
                           2473.0
     

     
     
37741
                           gb|AAO55256.1|
                           (AE016862) ABC transporter, ATP-binding/permease protein [Pseudomonas syringae pv. tomato str. DC3000]
                           609
                           78.16
                           86.86
                           14
                           2381.0
     

     
     
37742
                           gb|AAF94654.1|
                           (AE004228) ABC transporter, ATP-binding protein [Vibrio cholerae O1 biovar eltor str. N16961]
                           612
                           51.79
                           70.58
                           18
                           1598.0
     

     






      

          
GC ORFID: 43539How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0860Glimmer Score: 

          
Start: 240336Stop: 242126

          
Length: 1791


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0860 translation of PA0860Homolog Bit Score 1152.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7722 (ORF: BLASTX 941.0), t_PA0860 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGTGAGCGCGGAGACCGCCTGAGCTGGGCGGAGATTCGTCGACTCGCACTGCGCCACAAGAAAGCCCTG 
TTGCTCGCCAACCTGGTGGCGGTGCTGGCCACCCTCTGCACCGTGCCGATCCCCTTGCTGCTGCCGTTGCTG 
GTGGACGAAGTGCTGCTCGGCAAGGGCGACGGCGCGCTGCGTTTCATGGACCGCCTGTTGCCCGCCGACTGG 
CAGGTGGCGTTCGGCTACATCGGCCTGATGCTGGCGGCGACCCTCCTGTTGCGGGGGGCGGCGCTGGTGTTC 
AACGTGCTCCAGGCGAAGCTGTTCGCGCGGCTGTCCAAGGACATCGTCTACCGCATCCGCCTGCGTCTGATC 
GAGCGCCTCCGGCATATCGCCCTGGGCGAATACGAAACCCTCGGCGGCGGTTCGATCAGCGCCCACCTGGTG 
ACCGACCTGGACACCCTGGACAAGTTCGTCGGGGAAACCCTCAGCCGCTTCCTGGTCGCCTTGCTGACGCTG 
CTCGGCACCGCCGCGATCCTGGTCTGGATGCACTGGCAGCTGGCCTTGCTGATCCTGCTGTTCAACCCGCTG 
GTGATCTGGTCCACGGTACAACTGGGCAAGCGCGTCAAGCACCTCAAGAAGCTCGAGAACGACAGCACCGCG 
CGCTTCACCCAGGCGCTCACCGAGACCCTCGAGGCGATCCAGGAAGTCCGCGCCGGCAATCGCCAGGGCTAT 
TTCCTCGGCCGCCTCGGCCACCGCGCCCAGGAAGTCCGCGACTACGCCGTGGCCTCGCAATGGAAAAGCGAC 
GCCGCCGGGCGCGCCAGCGGCCTGCTGTTCCAGTTCGGCATCGATGTGTTCCGCGCCGCGGCGATGCTTACC 
GTGCTGCTCTCGGACCTGTCGATCGGCCAGATGCTCGCGGTGTTCAGCTACCTCTGGTTCATGATCGGTCCG 
GTCGAACAGCTGCTCGGCCTGCAATACGCCTACTACGCCGCTGGCGGCGCGTTGCAGCGGATCAACGAGTTG 
CTGGCGCGGGCCGACGAGCCGCGCTACCCGCCGCTGCGCGATCCGTTCGCCGGCCGCACGACCGTTGGCATC 
GAGGTGCGCGGGCTGGATTTCGCCTACGGCGAGGACAAGGTCCTGGAGCAGTTGGACCTGAACATCGGCGCC 
GGCGAGAAGGTTGCCCTGGTCGGCGCCAGCGGCGGCGGCAAGAGCACGCTGGTGCAACTGCTACTCGGCCTC 
TACAGTGCGCAGCGCGGCAGCATCCGCTACGGCGGGGTGCCCCTGGAGGAAATCGGCCTGGACTGCGTGCGC 
GAACATGTCGCGGTGGTCCTCCAGCATCCGGCGCTGTTCAACGACAGCGTGCGGGCCAACCTGACCATGGGC 
CGCGAACGCAGCGACCAGGCCTGCTGGCGGGCGTTGGAGATCGCCCAGTTGGCCGACGGCGTGCGGCGCCTG 
CCGCAGGGGCTGGACACCGTGGTCGGGCGTTCCGGGGTGCGCCTGTCGGGCGGTCAGCGGCAGCGCCTGGCG 
ATCGCCCGGATGATCCTCGCCGAGCCCAAGGTGGTGATCCTCGACGAGGCCACCTCGGCCCTCGACGCCGCT 
ACCGAGTACGCCCTGCACCAGGCGCTCGGCGACTTCCTCGAAGGCCGCACCACATTGATCGTGGCTCATCGG 
CTGTCGGCGGTGAAGCAGGCCGACCGGGTCCTGGTCTTCGATGGCGGGCATATCGCCGAAGACGGCGACCAC 
CAGCAACTGATCGCCGAAGGCGGCCTCTACGCCCGGCTCTACGGACATCTGCAACAGATGTGA