ViewGene
Locus Name:
GeneID:
Location:

GeneID:5369
TrivialName: PA14_39060
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_39060
PAO1 Ortholog Locus:PA1970
Sequence Length:240
Protein Length:79
Start: 3482675
Stop: 3482914
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05358.1|AE004623_8 (AE004623) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 79/79 (100%), Positives = 79/79 (100%)
Sequence:
ATGGCCAAGGCACTCATCAGCGTACTGTTGTTCTCCCTCGCCCTCGCCGGCTGCGCCAGCGACTACAACCCC
TCTCGCCCGTACAGCAGCGACGAGGTCAGGCAACTGGCGCTGGAAGACCTGGCCCGGCGCAGCCTGTCGTTC
GAGGAATACCAGGCCAAGCGTCAGGCGATTCTCGAGGAAAAACCGCAAACCGCCGTCAGCCAGTCCAACGCC
GCCCTACGCAGTACCGCCATCTGA
Translation:
MAKALISVLLFSLALAGCASDYNPSRPYSSDEVRQLALEDLARRSLSFEEYQAKRQAILEEKPQTAVSQSNA
ALRSTAI*
AnnotationID:5374GeneID:5369
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 15:03:49
Gene Name:
Confidence Code:3
GeneProduct:putative lipoprotein
Cell Localization:()
Synonyms:PA1970
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO56928.1| (AE016868) lipoprotein, putative [Pseudomonas syringae pv. tomato
          str. DC3000]
          Length = 91

 Score = 54.3 bits (129), Expect = 1e-07
 Identities = 30/63 (47%), Positives = 45/63 (71%), Gaps = 2/63 (3%)








 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:10738




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27884




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5369
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7764
                           PA1970_tr
                           translation of PA1970
                           79
                           99.99
                           99.99
                           0
                           378.0
     

     
     
196180
                           gb|AAG05358.1|AE004623_8
                           (AE004623) hypothetical protein PA1970 [Pseudomonas aeruginosa PAO1]
                           79
                           99.99
                           99.99
                           0
                           378.0
     

     






      

          
GC ORFID: 48371How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1970Glimmer Score: 

          
Start: 1471236Stop: 1470997

          
Length: 240


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1970 translation of PA1970Homolog Bit Score 150.0

          
Other Homologs:  t_PA1970 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCCAAGGCACTCATCAGCGTACTGTTGTTCTCCCTCGCCCTCGCCGGCTGCGCCAGCGACTACAACCCC 
TCTCGCCCGTACAGCAGCGACGAGGTCAGGCAACTGGCGCTGGAAGACCTGGCCCGGCGCAGCCTGTCGTTC 
GAGGAATACCAGGCCAAGCGTCAGGCGATTCTCGAGGAAAAACCGCAAACCGCCGTCAGCCAGTCCAACGCC 
GCCCTACGCAGTACCGCCATCTGA