ViewGene
Locus Name:
GeneID:
Location:

GeneID:5368
TrivialName: PA14_62670
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_62670
PAO1 Ortholog Locus:PA4737
Sequence Length:219
Protein Length:72
Start: 5594161
Stop: 5594379
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08123.1|AE004887_7 (AE004887) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 69/71 (97%), Positives = 71/71 (100%)
Sequence:
CTGGTCAGCACCGGCGACAGCAGCGCCGACGTTCTTGCGCGCTGCGGCGAGCCACGCAGCCGCGACAGCCTG
GGTTATCGCGAGGTCGTCGGGGAATGGGGCAAGCGCTACGAGGTCGAGGTCCAGGAATGGATCTATGGCCCA
TGGAACGGCATGCTGTATTTCGTCCGTTTCGAGGGCAACCGCCTCAGCGCCATCCAGAGCCGGCGCGGCGAC
TGA
Translation:
MVSTGDSSADVLARCGEPRSRDSLGYREVVGEWGKRYEVEVQEWIYGPWNGMLYFVRFEGNRLSAIQSRRGD
*
AnnotationID:5373GeneID:5368
AnnotatorUID: diggins
Modification Date/Time: 2005-03-09 07:07:09
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4737
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits at any threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:15324




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27882




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5368
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7763
                           PA4737_tr
                           translation of PA4737
                           72
                           97.22
                           98.61
                           1
                           382.0
     

     
     
196179
                           gb|AAG08123.1|AE004887_7
                           (AE004887) hypothetical protein PA4737 [Pseudomonas aeruginosa PAO1]
                           72
                           95.83
                           98.61
                           1
                           379.0
     

     






      

          
GC ORFID: 48370How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4737Glimmer Score: 

          
Start: 4857841Stop: 4858059

          
Length: 219


          
Start Codon: CTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4737 translation of PA4737Homolog Bit Score 151.0

          
Other Homologs:  

          
GC ORF Sequence

           
CTGGTCAGCACCGGCGACAGCAGCGCCGACGTTCTTGCGCGCTGCGGCGAGCCACGCAGCCGCGACAGCCTG 
GGTTATCGCGAGGTCGTCGGGGAATGGGGCAAGCGCTACGAGGTCGAGGTCCAGGAATGGATCTATGGCCCA 
TGGAACGGCATGCTGTATTTCGTCCGTTTCGAGGGCAACCGCCTCAGCGCCATCCAGAGCCGGCGCGGCGAC 
TGA