ViewGene
Locus Name:
GeneID:
Location:

GeneID:5367
TrivialName: PA14_39420
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_39420
PAO1 Ortholog Locus:PA1942
Sequence Length:231
Protein Length:76
Start: 3507877
Stop: 3508107
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05330.1|AE004621_1 (AE004621) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 75/76 (98%), Positives = 75/76 (98%)
Sequence:
GTGGCTAGTGAGACTATCCATTTTTCATTCGCCAACGCCGATGTTTACATAGTCGCCAGATCCCCGAATAAC
CAGAACGGAACTGGAGACGACACCATGAGCTACTCCGCCAAATCCTTCTCGGCCCTGATCAATGCCATGCGC
GCCGACGGCATCACCCGCCTGGAACAACTGGCCCGCCAGCCCTTCCGCAACGCCCAGGGTTTCTGGAGCGCG
GAGGCGAAGAAATGA
Translation:
MASETIHFSFANADVYIVARSPNNQNGTGDDTMSYSAKSFSALINAMRADGITRLEQLARQPFRNAQGFWSA
EAKK*
AnnotationID:5372GeneID:5367
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 12:12:01
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA1942
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:15322




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27881




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5367
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7762
                           PA1942_tr
                           translation of PA1942
                           76
                           98.68
                           98.68
                           0
                           382.0
     

     
     
196178
                           gb|AAG05330.1|AE004621_1
                           (AE004621) hypothetical protein PA1942 [Pseudomonas aeruginosa PAO1]
                           76
                           97.36
                           98.68
                           0
                           379.0
     

     






      

          
GC ORFID: 48369How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1942Glimmer Score: 

          
Start: 1446034Stop: 1445804

          
Length: 231


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1942 translation of PA1942Homolog Bit Score 151.0

          
Other Homologs:  t_PA1942 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGGCTAGTGAGACTATCCATTTTTCATTCGCCAACGCCGATGTTTACATAGTCGCCAGATCCCCGAATAAC 
CAGAACGGAACTGGAGACGACACCATGAGCTACTCCGCCAAATCCTTCTCGGCCCTGATCAATGCCATGCGC 
GCCGACGGCATCACCCGCCTGGAACAACTGGCCCGCCAGCCCTTCCGCAACGCCCAGGGTTTCTGGAGCGCG 
GAGGCGAAGAAATGA