ViewGene
Locus Name:
GeneID:
Location:

GeneID:5365
TrivialName: PA14_29190
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_29190
PAO1 Ortholog Locus:PA2703
Sequence Length:234
Protein Length:77
Start: 2524582
Stop: 2524349
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06091.1|AE004698_7 (AE004698) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 75/77 (97%), Positives = 76/77 (98%)
Sequence:
ATGAACCTGAAACCCCAGACCCTGATGGTGGCGATCCAGTGCGTCGCCGCGCGCACCCGCGAACTCGACGCG
CAGTTGCAGAACGACGACCCGCAGAACGCCGCTGAACTCGAACAGTTGCTGGTCGGCTACGACCTCGCCGCC
GACGACCTGAAGAACGCCTACGAGCAAGCCCTGGGCCAATACAGCGGCCTGCCGCCCTATGACCGGCTGATC
GAAGACCCGGTGTCCTGA
Translation:
MNLKPQTLMVAIQCVAARTRELDAQLQNDDPQNAAELEQLLVGYDLAADDLKNAYEQALGQYSGLPPYDRLI
EDPVS*
AnnotationID:5370GeneID:5365
AnnotatorUID: diggins
Modification Date/Time: 2005-03-07 20:08:47
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA2703
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:10730




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27877




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5365
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7760
                           PA2703_tr
                           translation of PA2703
                           77
                           97.40
                           98.70
                           0
                           384.0
     

     
     
196175
                           gb|AAG06091.1|AE004698_7
                           (AE004698) hypothetical protein PA2703 [Pseudomonas aeruginosa PAO1]
                           77
                           97.40
                           98.70
                           0
                           384.0
     

     






      

          
GC ORFID: 48367How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2703Glimmer Score: 

          
Start: 2429344Stop: 2429577

          
Length: 234


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2703 translation of PA2703Homolog Bit Score 152.0

          
Other Homologs:  t_PA2703 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACCTGAAACCCCAGACCCTGATGGTGGCGATCCAGTGCGTCGCCGCGCGCACCCGCGAACTCGACGCG 
CAGTTGCAGAACGACGACCCGCAGAACGCCGCTGAACTCGAACAGTTGCTGGTCGGCTACGACCTCGCCGCC 
GACGACCTGAAGAACGCCTACGAGCAAGCCCTGGGCCAATACAGCGGCCTGCCGCCCTATGACCGGCTGATC 
GAAGACCCGGTGTCCTGA