ViewGene
Locus Name:
GeneID:
Location:

GeneID:5364
TrivialName: PA14_40310
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_40310
PAO1 Ortholog Locus:PA1869
Sequence Length:240
Protein Length:79
Start: 3601703
Stop: 3601464
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05258.1|AE004613_3 (AE004613) probable acyl carrier protein [Pseudomonas aeruginosa PAO1]
Identities = 78/79 (98%), Positives = 78/79 (98%)
Sequence:
ATGGACGACATCGAGACCAGAGTGAGGAAGCTGGTAGCCGCCCGGCTCGGCGTGGAGGAATGCGACATCCGG
CTGGACAGCGATTTCCGTAACGACTTCGGTGCCGAGTCGCTCGAGGTGGTCGAACTGGTCATGGCCCTGGAA
GCGGAGTTCGGCGTCGAGATCGCCGATGACGATGCGGAACGGATCGAGACCGTGCGCCAGGCCATCGACTAT
CTCGAGGAAGCCGTGCCGACCTGA
Translation:
MDDIETRVRKLVAARLGVEECDIRLDSDFRNDFGAESLEVVELVMALEAEFGVEIADDDAERIETVRQAIDY
LEEAVPT*
AnnotationID:5369GeneID:5364
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 07:07:07
Gene Name:
Confidence Code:3
GeneProduct:putative acyl carrier protein
Cell Localization:()
Synonyms:PA1869
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0236,pfam00550
Secondary Functional Category(ies):secondary metabolites, biosynthesis, transport, and catabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAD14755.1| (AL646062) PROBABLE ACYL CARRIER PROTEIN [Ralstonia solanacearum]
          Length = 79

 Score = 95.1 bits (235), Expect = 8e-20
 Identities = 47/72 (65%), Positives = 60/72 (83%)

>emb|CAE35729.1| (BX640448) acyl carrier protein [Bordetella bronchiseptica]
          Length = 79

 Score = 88.2 bits (217), Expect = 9e-18
 Identities = 43/73 (58%), Positives = 59/73 (80%)

>emb|CAB83361.1| (AL162752) acyl carrier protein [Neisseria meningitidis Z2491]
          Length = 78

 Score = 87.8 bits (216), Expect = 1e-17
 Identities = 42/73 (57%), Positives = 58/73 (79%)






 
Structural Features:
COG0236, AcpP, Acyl carrier protein 
[Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
CD-Length = 80 residues,  93.8% aligned
Score = 55.7 bits (134), Expect = 1e-09
Identities = 38/75 (50%), Positives = 56/75 (74%)

pfam00550, PP-binding, Phosphopantetheine attachment site. 
CD-Length = 67 residues, 100.0% aligned
Score = 46.3 bits (110), Expect = 7e-07
Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 1/68 (1%)







   
Genomic Context:






   
Comment:


















    ReferenceID:10728




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27875




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37071




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5364_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5364
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7759
                           PA1869_tr
                           translation of PA1869
                           79
                           98.73
                           98.73
                           0
                           384.0
     

     
     
196173
                           gb|AAG05258.1|AE004613_3
                           (AE004613) probable acyl carrier protein [Pseudomonas aeruginosa PAO1]
                           79
                           98.73
                           98.73
                           0
                           384.0
     

     
     
196174
                           gb|AAC38778.1|
                           (AF044261) AcpP-like protein [Pseudomonas aeruginosa]
                           79
                           98.73
                           98.73
                           0
                           384.0
     

     






      

          
GC ORFID: 48366How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1869Glimmer Score: 

          
Start: 1352207Stop: 1352446

          
Length: 240


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1869 translation of PA1869Homolog Bit Score 152.0

          
Other Homologs:  t_PA1869 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGACGACATCGAGACCAGAGTGAGGAAGCTGGTAGCCGCCCGGCTCGGCGTGGAGGAATGCGACATCCGG 
CTGGACAGCGATTTCCGTAACGACTTCGGTGCCGAGTCGCTCGAGGTGGTCGAACTGGTCATGGCCCTGGAA 
GCGGAGTTCGGCGTCGAGATCGCCGATGACGATGCGGAACGGATCGAGACCGTGCGCCAGGCCATCGACTAT 
CTCGAGGAAGCCGTGCCGACCTGA