ViewGene
Locus Name:
GeneID:
Location:

GeneID:5363
TrivialName: PA14_00720
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_00720
PAO1 Ortholog Locus:PA0060
Sequence Length:234
Protein Length:77
Start: 71678
Stop: 71911
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03450.1|AE004445_11 (AE004445) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 77/77 (100%), Positives = 77/77 (100%)
Sequence:
ATGAAAACCATCGGGCTGGGGATTGCCACCTTGCTGTTCAGCGCCACGGCGCTGGCCGCGCCGAAGCCGTGC
GAGGAACTCAAGGCGGAGATCGAGACCAAGATCCAGTCGGCCGGGGTGACCTCCTACACCCTGGAGATCGTG
CGCAACGACGAAGTCAGCGACCCGAACATGGTGGTCGGCAGTTGCGAGAACGGCACCAAGAAGATCATCTAC
CAGAAGAACGACGACTGA
Translation:
MKTIGLGIATLLFSATALAAPKPCEELKAEIETKIQSAGVTSYTLEIVRNDEVSDPNMVVGSCENGTKKIIY
QKNDD*
AnnotationID:5368GeneID:5363
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 16:04:23
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0060
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:10726




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27873




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5363
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7758
                           PA0060_tr
                           translation of PA0060
                           77
                           99.99
                           99.99
                           0
                           387.0
     

     
     
196170
                           gb|AAG03450.1|AE004445_11
                           (AE004445) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           77
                           99.99
                           99.99
                           0
                           387.0
     

     
     
196171
                           gb|AAO53705.1|
                           (AE016856) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           77
                           66.23
                           76.62
                           0
                           255.0
     

     
     
196172
                           gb|AAN65724.1|AE016198_11
                           (AE016774) conserved hypothetical protein [Pseudomonas putida KT2440]
                           98
                           51.02
                           60.20
                           21
                           252.0
     

     






      

          
GC ORFID: 48365How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0060Glimmer Score: 

          
Start: 5873015Stop: 5873248

          
Length: 234


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0060 translation of PA0060Homolog Bit Score 153.0

          
Other Homologs:  t_PA0060 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAAACCATCGGGCTGGGGATTGCCACCTTGCTGTTCAGCGCCACGGCGCTGGCCGCGCCGAAGCCGTGC 
GAGGAACTCAAGGCGGAGATCGAGACCAAGATCCAGTCGGCCGGGGTGACCTCCTACACCCTGGAGATCGTG 
CGCAACGACGAAGTCAGCGACCCGAACATGGTGGTCGGCAGTTGCGAGAACGGCACCAAGAAGATCATCTAC 
CAGAAGAACGACGACTGA