ViewGene

Locus Name:
GeneID:
Location:

GeneID:5360
TrivialName: PA14_69600
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_69600
PAO1 Ortholog Locus:PA5271
Sequence Length:234
Protein Length:77
Start: 6209203
Stop: 6209436
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08656.1|AE004939_8 (AE004939) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 77/77 (100%), Positives = 77/77 (100%)
Sequence:
ATGGCCTTCACTCCCGAGCTGATCGACGAACTGGAACTGCTGGCGCTCTTCAACCTGAACAACACCCAGGAA
GGACTCAAGGTCCATCACACCGCCGACGGCAAGGCCGTCGCCGCCGCCCGACGCCTGCACGACAAGGGGCTG
ATCGACCAGCCCGACGGCGGCTACCTGACCAGTCTCGGGCTGGACGCCGCGGAGCAGGCACAGGGCCTGCTG
ACCATCCTCAAGGGTTGA
Translation:
MAFTPELIDELELLALFNLNNTQEGLKVHHTADGKAVAAARRLHDKGLIDQPDGGYLTSLGLDAAEQAQGLL
TILKG*
AnnotationID:5365GeneID:5360
AnnotatorUID: diggins
Modification Date/Time: 2005-03-16 08:08:32
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA5271
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:10720
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:27867
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:5360

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7755 PA5271_tr translation of PA5271 77 99.99 99.99 0 388.0
196164 gb|AAG08656.1|AE004939_8 (AE004939) hypothetical protein PA5271 [Pseudomonas aeruginosa PAO1] 77 99.99 99.99 0 388.0
196165 gb|AAO53777.1| (AE016856) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 82 64.63 76.82 5 263.0
GC ORFID: 48362How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5271Glimmer Score:
Start: 5472890Stop: 5473123
Length: 234
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA5271 translation of PA5271Homolog Bit Score 154.0
Other Homologs: psyr_15may02_Scaffold2_revised_gene3110 (ORF: BLASTX 110.0), t_PA5271 (ORF: GLIMMER)
GC ORF Sequence
ATGGCCTTCACTCCCGAGCTGATCGACGAACTGGAACTGCTGGCGCTCTTCAACCTGAACAACACCCAGGAA
GGACTCAAGGTCCATCACACCGCCGACGGCAAGGCCGTCGCCGCCGCCCGACGCCTGCACGACAAGGGGCTG
ATCGACCAGCCCGACGGCGGCTACCTGACCAGTCTCGGGCTGGACGCCGCGGAGCAGGCACAGGGCCTGCTG
ACCATCCTCAAGGGTTGA