ViewGene
Locus Name:
GeneID:
Location:

GeneID:536
TrivialName: PA14_47930
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_47930
PAO1 Ortholog Locus:PA1259
Sequence Length:1743
Protein Length:580
Start: 4266315
Stop: 4268057
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04648.1|AE004555_8 (AE004555) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 575/580 (99%), Positives = 578/580 (99%)
Sequence:
ATGAAGCACGCACACCTCATCGTTCCCCGTACCCTGGTCGCCGGCAGCGCGTCCGGCGAACTGCTGTACGCA
CCGACCGGCCTGAGCTTCTGGGGCGGCGTCGACCCGCGCAGCGCGGAAGTGATCGACCGCCACCACCCGCTC
AGCGGCCGCCATCTGCACGGCAGGCTGCTGGCGATTCCCGGTGGGCGCGGCTCCTGCACCGGCAGCAGCGTA
CTGCTGGAACTGATCCTCGGCGGACGTGCGCCGGCGGCGATCCTCCTGCGCGAACCGGACGAAATCCTCGCC
CTCGGCGCGATAGTCGCCGAGGAACTGTTCGGCCGCTCGCTACCCATCGCCTGTCTCGGCGAGCGCTTCGAC
GAACTCGCCGCCTATCCCTGGGCGCGCCTGGCCGACGGTCGCCTGGAACTCCACCGCGATGCCCCGCCGCCG
CTGGAGGCCCGGCCCGCCGAAGCGCTGGCGACCGATGCCGGCCCGCGACTGGACGCCTTCGACCAGGCCCTG
CTCGCCGGCGAACACGGCGAAGCCGCGCGCCTGGCGATGCGCATCGTCCTGCGCATGGCGGCGTTGCAGGGC
GCGCAACGGCTGGTCGAGATCCAGCGCGCGCACATCGACGCTTGCATCTACACCGGCCCGGCCGGCCTGCGC
TTCGCCGAGACCCTGCGCGACCTCGGTGCCCGGGTGCGGGTACCGACCACCCTCAACGCCATCTCCGTGGAC
CAGCGCCGCTGGCGCGAACAGGGCGTACCCGCCGCCCTCGGCGAGCCAGCCGCGGCCCTGGCCCAGGCCTAT
CTCGACATGGGCGCGCAGCCCAGCTTCACCTGCGCGCCCTACCTGCTCGACGACAGCGCGCGGGCCGGCGAA
CAGATCGTCTGGGCCGAGTCCAACGCGGTGCTCTTCGCCAACAGCGTGCTCGGCGCACGCACCAACAAGTAC
GCCGACTTCATGGATATCTGCTGCGCCCTCACCGGTCGCGCGCCGCTGGCCGGCTGCCACCTCGACGAGCAG
CGCCAGGCGCGGGTACTGATCGAAGTGGAAGACCTCGGCAGCGTCGACGATGCCTTCTACCCGACCCTCGGC
TACCTCTGCGGCCTGCTCTGCGACGGACAGATCCCGGCGATCGACGGCCTGCGGCAGCGGCAGCCGGACCAC
GACGCGCTCAAGGCCTTCGGCGCGGCGCTGGGCACCAGTTCCTCGGTGCCGATGTTCCACGTCATCGGCGTC
ACCCCGGAAGCCCCTGACCTGGCCAGCGCCTTCGGCGGCCGCGCGCCGCGGCGGACCCTGCGGGTCGGACGC
GAGCGCCTGCGCGACGCCTGGCGCGAGCTGGACAGCGCCGGCGAGACGCGGATCGACCTGGTGGCGCTGGGC
AACCCGCACTTCTCCGCCAGCGAATTCGCCCAGCTCGCCGCGCTCTGCCACGGCCGCCGCAGACACCCGGAG
GTAGCGCTGGTGATCACCAGCAGCCGGCAGGTCGTCGCCCAGGCCGAAGCGGCCGGGCACCTGGCGACGCTG
CAGGCGTTCGGCGCGCGGCTGGTCACCGACACCTGCTGGTGCATGCTCGACGAACCGCTGGTACCGCCGGGC
GCGCGCACCCTGATGACCAACTCCGCCAAGTATGCCCACTACGCCCCCGGACTGGTCAGCCGCCAGGTGCGC
TTCGCCGGCCTCGCCGGCTGCGTCGAGGCCGCCGTCGGCGGACGGCCCCCCGCCGGGCTGCCCGCCTGGCTG
AGCGAGGACTGCTGA
Translation:
MKHAHLIVPRTLVAGSASGELLYAPTGLSFWGGVDPRSAEVIDRHHPLSGRHLHGRLLAIPGGRGSCTGSSV
LLELILGGRAPAAILLREPDEILALGAIVAEELFGRSLPIACLGERFDELAAYPWARLADGRLELHRDAPPP
LEARPAEALATDAGPRLDAFDQALLAGEHGEAARLAMRIVLRMAALQGAQRLVEIQRAHIDACIYTGPAGLR
FAETLRDLGARVRVPTTLNAISVDQRRWREQGVPAALGEPAAALAQAYLDMGAQPSFTCAPYLLDDSARAGE
QIVWAESNAVLFANSVLGARTNKYADFMDICCALTGRAPLAGCHLDEQRQARVLIEVEDLGSVDDAFYPTLG
YLCGLLCDGQIPAIDGLRQRQPDHDALKAFGAALGTSSSVPMFHVIGVTPEAPDLASAFGGRAPRRTLRVGR
ERLRDAWRELDSAGETRIDLVALGNPHFSASEFAQLAALCHGRRRHPEVALVITSSRQVVAQAEAAGHLATL
QAFGARLVTDTCWCMLDEPLVPPGARTLMTNSAKYAHYAPGLVSRQVRFAGLAGCVEAAVGGRPPAGLPAWL
SEDC*
AnnotationID:545GeneID:536
AnnotatorUID: diggins
Modification Date/Time: 2005-02-22 12:12:50
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1259
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:1075




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18217




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37540




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:536_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:536
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
934
                           PA1259_tr
                           translation of PA1259
                           580
                           99.13
                           99.65
                           0
                           2982.0
     

     
     
37733
                           gb|AAG04648.1|AE004555_8
                           (AE004555) hypothetical protein PA1259 [Pseudomonas aeruginosa PAO1]
                           580
                           99.13
                           99.65
                           0
                           2982.0
     

     
     
37734
                           emb|CAC48659.1|
                           (AL603642) CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti]
                           581
                           49.22
                           63.85
                           19
                           1410.0
     

     
     
37735
                           gb|AAL45477.1|
                           (AE009397) conserved hypothetical protein [Agrobacterium tumefaciens str. C58 (U. Washington)]
                           596
                           45.80
                           61.57
                           43
                           1322.0
     

     
     
37736
                           gb|AAK88767.1|
                           (AE008218) AGR_L_398p [Agrobacterium tumefaciens str. C58 (Cereon)]
                           596
                           45.80
                           61.57
                           43
                           1322.0
     

     






      

          
GC ORFID: 43538How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1259Glimmer Score: 

          
Start: 687594Stop: 685852

          
Length: 1743


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1259 translation of PA1259Homolog Bit Score 1153.0

          
Other Homologs:  t_PA1259 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAGCACGCACACCTCATCGTTCCCCGTACCCTGGTCGCCGGCAGCGCGTCCGGCGAACTGCTGTACGCA 
CCGACCGGCCTGAGCTTCTGGGGCGGCGTCGACCCGCGCAGCGCGGAAGTGATCGACCGCCACCACCCGCTC 
AGCGGCCGCCATCTGCACGGCAGGCTGCTGGCGATTCCCGGTGGGCGCGGCTCCTGCACCGGCAGCAGCGTA 
CTGCTGGAACTGATCCTCGGCGGACGTGCGCCGGCGGCGATCCTCCTGCGCGAACCGGACGAAATCCTCGCC 
CTCGGCGCGATAGTCGCCGAGGAACTGTTCGGCCGCTCGCTACCCATCGCCTGTCTCGGCGAGCGCTTCGAC 
GAACTCGCCGCCTATCCCTGGGCGCGCCTGGCCGACGGTCGCCTGGAACTCCACCGCGATGCCCCGCCGCCG 
CTGGAGGCCCGGCCCGCCGAAGCGCTGGCGACCGATGCCGGCCCGCGACTGGACGCCTTCGACCAGGCCCTG 
CTCGCCGGCGAACACGGCGAAGCCGCGCGCCTGGCGATGCGCATCGTCCTGCGCATGGCGGCGTTGCAGGGC 
GCGCAACGGCTGGTCGAGATCCAGCGCGCGCACATCGACGCTTGCATCTACACCGGCCCGGCCGGCCTGCGC 
TTCGCCGAGACCCTGCGCGACCTCGGTGCCCGGGTGCGGGTACCGACCACCCTCAACGCCATCTCCGTGGAC 
CAGCGCCGCTGGCGCGAACAGGGCGTACCCGCCGCCCTCGGCGAGCCAGCCGCGGCCCTGGCCCAGGCCTAT 
CTCGACATGGGCGCGCAGCCCAGCTTCACCTGCGCGCCCTACCTGCTCGACGACAGCGCGCGGGCCGGCGAA 
CAGATCGTCTGGGCCGAGTCCAACGCGGTGCTCTTCGCCAACAGCGTGCTCGGCGCACGCACCAACAAGTAC 
GCCGACTTCATGGATATCTGCTGCGCCCTCACCGGTCGCGCGCCGCTGGCCGGCTGCCACCTCGACGAGCAG 
CGCCAGGCGCGGGTACTGATCGAAGTGGAAGACCTCGGCAGCGTCGACGATGCCTTCTACCCGACCCTCGGC 
TACCTCTGCGGCCTGCTCTGCGACGGACAGATCCCGGCGATCGACGGCCTGCGGCAGCGGCAGCCGGACCAC 
GACGCGCTCAAGGCCTTCGGCGCGGCGCTGGGCACCAGTTCCTCGGTGCCGATGTTCCACGTCATCGGCGTC 
ACCCCGGAAGCCCCTGACCTGGCCAGCGCCTTCGGCGGCCGCGCGCCGCGGCGGACCCTGCGGGTCGGACGC 
GAGCGCCTGCGCGACGCCTGGCGCGAGCTGGACAGCGCCGGCGAGACGCGGATCGACCTGGTGGCGCTGGGC 
AACCCGCACTTCTCCGCCAGCGAATTCGCCCAGCTCGCCGCGCTCTGCCACGGCCGCCGCAGACACCCGGAG 
GTAGCGCTGGTGATCACCAGCAGCCGGCAGGTCGTCGCCCAGGCCGAAGCGGCCGGGCACCTGGCGACGCTG 
CAGGCGTTCGGCGCGCGGCTGGTCACCGACACCTGCTGGTGCATGCTCGACGAACCGCTGGTACCGCCGGGC 
GCGCGCACCCTGATGACCAACTCCGCCAAGTATGCCCACTACGCCCCCGGACTGGTCAGCCGCCAGGTGCGC 
TTCGCCGGCCTCGCCGGCTGCGTCGAGGCCGCCGTCGGCGGACGGCCCCCCGCCGGGCTGCCCGCCTGGCTG 
AGCGAGGACTGCTGA