ViewGene
Locus Name:
GeneID:
Location:

GeneID:5359
TrivialName: PA14_66710
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_66710
PAO1 Ortholog Locus:PA5049
Sequence Length:216
Protein Length:71
Start: 5958704
Stop: 5958489
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08434.1|AE004918_4 (AE004918) 50S ribosomal protein L31 [Pseudomonas aeruginosa PAO1]
Identities = 71/71 (100%), Positives = 71/71 (100%)
Sequence:
ATGAAAGCGGACATCCATCCGACTTACGAAGCTATCGAAGCTACCTGCAGCTGCGGTAACGTCATCAAGACC
CGTTCCACCCTGTGCAAGCCGATCCACCTGGACGTGTGCTCCGAATGCCACCCGTTCTACACCGGCAAGCAG
AAGGTGCTGGACACCGGCGGCCGTATCGACCGCTTCAAGCAGCGTTTCGGCGTATTCGGCGCCACCAAGTAA
Translation:
MKADIHPTYEAIEATCSCGNVIKTRSTLCKPIHLDVCSECHPFYTGKQKVLDTGGRIDRFKQRFGVFGATK*
AnnotationID:5364GeneID:5359
AnnotatorUID: diggins
Modification Date/Time: 2005-03-14 18:06:00
Gene Name:rpmE
Confidence Code:2
GeneProduct:50S ribosomal protein L31
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0254,pfam01197
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58563.1| (AE016874) ribosomal protein L31 [Pseudomonas syringae pv. tomato
          str. DC3000]
          Length = 75

 Score =  130 bits (328), Expect = 1e-30
 Identities = 58/71 (81%), Positives = 63/71 (88%)

>gb|AAC22417.1| (U32760) ribosomal protein L31 (rpL31) [Haemophilus influenzae
          Rd]
          Length = 70

 Score =  106 bits (265), Expect = 3e-23
 Identities = 47/66 (71%), Positives = 54/66 (81%)

>gb|AAN70652.1|AE016709_4 (AE016793) ribosomal protein L31 [Pseudomonas putida KT2440]
          Length = 100

 Score =  106 bits (264), Expect = 3e-23
 Identities = 46/71 (64%), Positives = 54/71 (76%)








 
Structural Features:
COG0254, RpmE, Ribosomal protein L31 [Translation, ribosomal structure and biogenesis]
CD-Length = 75 residues,  98.7% aligned
Score = 93.0 bits (231), Expect = 7e-21
Identities = 42/74 (56%), Positives = 51/74 (68%), Gaps = 3/74 (4%)

pfam01197, Ribosomal protein L31.
CD-Length = 68 residues,  98.5% aligned
Score = 91.9 bits (228), Expect = 1e-20
Identities = 36/67 (53%), Positives = 51/67 (76%), Gaps = 1/67 (1%)







   
Genomic Context:






   
Comment:


















    ReferenceID:10718




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27865




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34982




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5359_cdd.html


    		




 
URL:

















    ReferenceID:35841




  
Author/Investigator(s):
        Brosius J.





  
Title:
        Primary structure of Escherichia coli ribosomal protein L31.




  
PubMed:
        339950


MedLine:
        




    
Source:
Biochemistry. 1978 Feb 7;17(3):501-8.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=78080789&dopt=Abstract









           
Homologs By Global Alignment 

           

       



     
Gene ID:5359
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7754
                           PA5049_tr
                           translation of PA5049
                           71
                           99.99
                           99.99
                           0
                           390.0
     

     
     
196139
                           gb|AAG08434.1|AE004918_4
                           (AE004918) 50S ribosomal protein L31 [Pseudomonas aeruginosa PAO1]
                           71
                           99.99
                           99.99
                           0
                           390.0
     

     
     
196140
                           gb|AAO58563.1|
                           (AE016874) ribosomal protein L31 [Pseudomonas syringae pv. tomato str. DC3000]
                           75
                           77.33
                           84.00
                           4
                           328.0
     

     
     
196141
                           gb|AAC22417.1|
                           (U32760) ribosomal protein L31 (rpL31) [Haemophilus influenzae Rd] [Haemophilus influenzae Rd KW20]
                           71
                           69.01
                           80.28
                           1
                           264.0
     

     
     
196145
                           gb|AAB49622.1|
                           (U58147) ribosomal protein L31 [Haemophilus ducreyi]
                           71
                           66.19
                           81.69
                           1
                           260.0
     

     






      

          
GC ORFID: 48361How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5049Glimmer Score: 

          
Start: 5222387Stop: 5222172

          
Length: 216


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA5049 translation of PA5049Homolog Bit Score 154.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3285 (ORF: BLASTX 132.0), t_PA5049 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAAGCGGACATCCATCCGACTTACGAAGCTATCGAAGCTACCTGCAGCTGCGGTAACGTCATCAAGACC 
CGTTCCACCCTGTGCAAGCCGATCCACCTGGACGTGTGCTCCGAATGCCACCCGTTCTACACCGGCAAGCAG 
AAGGTGCTGGACACCGGCGGCCGTATCGACCGCTTCAAGCAGCGTTTCGGCGTATTCGGCGCCACCAAGTAA