ViewGene
Locus Name:
GeneID:
Location:

GeneID:5358
TrivialName: PA14_65170
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_65170
PAO1 Ortholog Locus:PA4934
Sequence Length:231
Protein Length:76
Start: 5808665
Stop: 5808435
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08319.1|AE004906_7 (AE004906) 30S ribosomal protein S18 [Pseudomonas aeruginosa PAO1]
Identities = 76/76 (100%), Positives = 76/76 (100%)
Sequence:
ATGGCACGTTTCTTCCGTCGTCGTAAGTTCTGCCGCTTCACCGCCGAAGGCGTGAAAGAGATCGATTACAAG
GATCTCAACACCCTGAAGGCCTACGTTTCCGAAACCGGCAAGATCGTTCCGAGCCGTATCACCGGCACCAAG
GCCAAGTACCAGCGTCAGCTGGCGACCGCTATCAAGCGCGCCCGCTACCTGGCCCTGCTTCCTTACACCGAC
AGCCACGGCCGTTGA
Translation:
MARFFRRRKFCRFTAEGVKEIDYKDLNTLKAYVSETGKIVPSRITGTKAKYQRQLATAIKRARYLALLPYTD
SHGR*
AnnotationID:5363GeneID:5358
AnnotatorUID: diggins
Modification Date/Time: 2005-03-13 12:12:29
Gene Name:rpsR
Confidence Code:2
GeneProduct:30S ribosomal protein S18
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam01084
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70445.1|AE016685_10 (AE016792) ribosomal protein S18 [Pseudomonas putida KT2440]
          Length = 76

 Score =  147 bits (371), Expect = 1e-35
 Identities = 72/76 (94%), Positives = 75/76 (98%)

>gb|AAO58360.1| (AE016873) ribosomal protein S18 [Pseudomonas syringae pv. tomato
          str. DC3000]
          Length = 76

 Score =  145 bits (367), Expect = 4e-35
 Identities = 72/76 (94%), Positives = 74/76 (97%)

>gb|AAM36489.1| (AE011794) 30S ribosomal protein S18 [Xanthomonas axonopodis pv.
          citri str. 306]
          Length = 76

 Score =  134 bits (336), Expect = 1e-31
 Identities = 60/74 (81%), Positives = 72/74 (97%)








 
Structural Features:
pfam01084, Ribosomal_S18, Ribosomal protein S18.
CD-Length = 54 residues, 100.0% aligned
Score = 71.8 bits (176), Expect = 2e-14
Identities = 36/54 (66%), Positives = 44/54 (81%)






   
Genomic Context:






   
Comment:


















    ReferenceID:10716




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27863




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35130




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5358_cdd.html


    		




 
URL:

















    ReferenceID:35915




  
Author/Investigator(s):
        Schnier J, Kitakawa M, Isono K.





  
Title:
        The nucleotide sequence of an Escherichia coli chromosomal region containing the genes for ribosomal proteins S6, S18, L9 and an open reading frame.




  
PubMed:
        3528756


MedLine:
        




    
Source:
Mol Gen Genet. 1986 Jul;204(1):126-32.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=3528756

















    ReferenceID:35918




  
Author/Investigator(s):
        Ropp PA, Nicholas RA.





  
Title:
        Nucleotide sequence of a three gene cluster in Neisseria Gonorrhoeae encoding ribosomal proteins S6, S18, and L9.




  
PubMed:
        10524762


MedLine:
        




    
Source:
DNA Seq. 1998;9(5-6):341-5.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10524762









           
Homologs By Global Alignment 

           

       



     
Gene ID:5358
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7753
                           PA4934_tr
                           translation of PA4934
                           76
                           99.99
                           99.99
                           0
                           389.0
     

     
     
196096
                           gb|AAG08319.1|AE004906_7
                           (AE004906) 30S ribosomal protein S18 [Pseudomonas aeruginosa PAO1]
                           76
                           99.99
                           99.99
                           0
                           389.0
     

     
     
196097
                           gb|AAN70445.1|AE016685_10
                           (AE016792) ribosomal protein S18 [Pseudomonas putida KT2440]
                           76
                           94.73
                           98.68
                           0
                           371.0
     

     
     
196098
                           gb|AAO58360.1|
                           (AE016873) ribosomal protein S18 [Pseudomonas syringae pv. tomato str. DC3000]
                           76
                           94.73
                           97.36
                           0
                           367.0
     

     
     
196100
                           gb|AAF93541.1|
                           (AE004124) ribosomal protein S18 [Vibrio cholerae O1 biovar eltor str. N16961]
                           76
                           84.21
                           89.47
                           1
                           331.0
     

     






      

          
GC ORFID: 48360How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4934Glimmer Score: 

          
Start: 5072346Stop: 5072116

          
Length: 231


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4934 translation of PA4934Homolog Bit Score 154.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3440 (ORF: BLASTX 145.0), t_PA4934 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCACGTTTCTTCCGTCGTCGTAAGTTCTGCCGCTTCACCGCCGAAGGCGTGAAAGAGATCGATTACAAG 
GATCTCAACACCCTGAAGGCCTACGTTTCCGAAACCGGCAAGATCGTTCCGAGCCGTATCACCGGCACCAAG 
GCCAAGTACCAGCGTCAGCTGGCGACCGCTATCAAGCGCGCCCGCTACCTGGCCCTGCTTCCTTACACCGAC 
AGCCACGGCCGTTGA