ViewGene
Locus Name:
GeneID:
Location:

GeneID:5357
TrivialName: PA14_60480
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_60480
PAO1 Ortholog Locus:PA4570
Sequence Length:225
Protein Length:74
Start: 5390436
Stop: 5390660
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07958.1|AE004870_9 (AE004870) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 74/74 (100%), Positives = 74/74 (100%)
Sequence:
ATGACTTATTTGATCGATGCCTGGCTTGATCGGCCACACCCCTACCTGCGGATCCTGCACCGGGAAACCGGG
GAAATCTGCGCAGTCCTGGAAGAAGACGCGCTGGACGAACTGCGTGACCAGGGCGGCCTGGACCTGCACGAG
TTGAACTCGAGCGAACCGCTGATCCTCAAGGAGCTGGTACGCAACCTGTTCCTCTTCTGCTACGCCCGCGCC
CTGCGCTGA
Translation:
MTYLIDAWLDRPHPYLRILHRETGEICAVLEEDALDELRDQGGLDLHELNSSEPLILKELVRNLFLFCYARA
LR*
AnnotationID:5362GeneID:5357
AnnotatorUID: diggins
Modification Date/Time: 2005-05-05 08:08:34
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4570
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:10714




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27861




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5357
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7752
                           PA4570_tr
                           translation of PA4570
                           74
                           99.99
                           99.99
                           0
                           389.0
     

     
     
196093
                           gb|AAG07958.1|AE004870_9
                           (AE004870) hypothetical protein PA4570 [Pseudomonas aeruginosa PAO1]
                           74
                           99.99
                           99.99
                           0
                           389.0
     

     
     
196094
                           gb|AAO58026.1|
                           (AE016872) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           80
                           81.25
                           88.75
                           6
                           348.0
     

     
     
196095
                           gb|AAN66310.1|AE016259_8
                           (AE016776) conserved hypothetical protein [Pseudomonas putida KT2440]
                           81
                           80.24
                           86.41
                           7
                           346.0
     

     






      

          
GC ORFID: 48359How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4570Glimmer Score: 

          
Start: 4654116Stop: 4654340

          
Length: 225


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4570 translation of PA4570Homolog Bit Score 154.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5632 (ORF: BLASTX 138.0), t_PA4570 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACTTATTTGATCGATGCCTGGCTTGATCGGCCACACCCCTACCTGCGGATCCTGCACCGGGAAACCGGG 
GAAATCTGCGCAGTCCTGGAAGAAGACGCGCTGGACGAACTGCGTGACCAGGGCGGCCTGGACCTGCACGAG 
TTGAACTCGAGCGAACCGCTGATCCTCAAGGAGCTGGTACGCAACCTGTTCCTCTTCTGCTACGCCCGCGCC 
CTGCGCTGA