ViewGene
Locus Name:
GeneID:
Location:

GeneID:5356
TrivialName: PA14_11570
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_11570
PAO1 Ortholog Locus:PA4042
Sequence Length:243
Protein Length:80
Start: 1000937
Stop: 1000695
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07429.1|AE004821_2 (AE004821) exodeoxyribonuclease VII small subunit [Pseudomonas aeruginosa PAO1]
Identities = 80/80 (100%), Positives = 80/80 (100%)
Sequence:
ATGGCCCGCAAGAAAACCCTCGATTTCGAACAGTCCCTCACCGAGCTGCAAACCCTGGTGGAACGCCTGGAA
AGCGGCGAGCTGTCGCTGGAAGAGTCGCTGGGCGCCTTCGAGCAGGGCATCCGCCTGACCCGCGAATGCCAG
ACGTCGCTGAGCCAGGCCGAACAGAAGGTACAGATCCTCCTCGAACGCGACGGCGAGCTCAGCGAAGCGCCG
TTCGATGCGGAAGGCGACGAGGCATGA
Translation:
MARKKTLDFEQSLTELQTLVERLESGELSLEESLGAFEQGIRLTRECQTSLSQAEQKVQILLERDGELSEAP
FDAEGDEA*
AnnotationID:5361GeneID:5356
AnnotatorUID: urbach
Modification Date/Time: 2004-10-05 17:05:09
Gene Name:xseB
Confidence Code:2
GeneProduct:exodeoxyribonuclease VII small subunit
Cell Localization:()
Synonyms:PA4042
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(11) DNA replication, recombination, modification and repair
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam02609,COG1722
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gb|AAN79011.1|AE016756_194 (AE016756) Exodeoxyribonuclease VII small subunit
[Escherichia coli CFT073]
Length = 80
Score = 72.0 bits (175), Expect = 7e-13
Identities = 35/70 (50%), Positives = 51/70 (72%)






 
Structural Features:
gnl|CDD|4781 pfam02609, Exonuc_VII_S, Exonuclease VII small subunit. This family
consist of exonuclease VII, small subunit EC:3.1.11.6
This enzyme catalyses exonucleolytic cleavage in either
5'->3' or 3'->5' direction to yield
5'-phosphomononucleotides. This exonuclease VII enzyme is
composed of one large subunit and 4 small ones
Length = 64
Score = 56.8 bits (137), Expect = 8e-10
Identities = 38/64 (59%), Positives = 49/64 (76%)






   
Genomic Context:






   
Comment:


















    ReferenceID:10712




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27859




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34627




  
Author/Investigator(s):
        Vales LD, Rabin BA, Chase JW.





  
Title:
        Subunit structure of Escherichia coli exonuclease VII.




  
PubMed:
        6284744


MedLine:
        




    
Source:
J Biol Chem. 1982 Aug 10;257(15):8799-805.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=6284744









           
Homologs By Global Alignment 

           

       



     
Gene ID:5356
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7751
                           PA4042_tr
                           translation of PA4042
                           80
                           99.99
                           99.99
                           0
                           388.0
     

     
     
196090
                           gb|AAG07429.1|AE004821_2
                           (AE004821) exodeoxyribonuclease VII small subunit [Pseudomonas aeruginosa PAO1]
                           80
                           99.99
                           99.99
                           0
                           388.0
     

     
     
196091
                           gb|AAN66156.1|AE016243_8
                           (AE016776) exodeoxyribonuclease VII, small subunit [Pseudomonas putida KT2440]
                           81
                           76.54
                           86.41
                           2
                           294.0
     

     
     
196092
                           gb|AAO54242.1|
                           (AE016858) exodeoxyribonuclease VII, small subunit [Pseudomonas syringae pv. tomato str. DC3000]
                           82
                           75.60
                           87.80
                           3
                           292.0
     

     






      

          
GC ORFID: 48358How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4042Glimmer Score: 

          
Start: 3953000Stop: 3953242

          
Length: 243


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4042 translation of PA4042Homolog Bit Score 154.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3639 (ORF: BLASTX 117.0), t_PA4042 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCCCGCAAGAAAACCCTCGATTTCGAACAGTCCCTCACCGAGCTGCAAACCCTGGTGGAACGCCTGGAA 
AGCGGCGAGCTGTCGCTGGAAGAGTCGCTGGGCGCCTTCGAGCAGGGCATCCGCCTGACCCGCGAATGCCAG 
ACGTCGCTGAGCCAGGCCGAACAGAAGGTACAGATCCTCCTCGAACGCGACGGCGAGCTCAGCGAAGCGCCG 
TTCGATGCGGAAGGCGACGAGGCATGA