ViewGene
Locus Name:
GeneID:
Location:

GeneID:5355
TrivialName: PA14_22320
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_22320
PAO1 Ortholog Locus:PA3237
Sequence Length:222
Protein Length:73
Start: 1944257
Stop: 1944036
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06625.1|AE004746_9 (AE004746) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 73/73 (100%), Positives = 73/73 (100%)
Sequence:
ATGCTCAAGACCCTGACCTTCACCGTCATGCACTTCATCATCGCCTTCAGCGTGGCCTATGCGCTGACCGGC
AGCATAGCGGTCGGCGGGCTGGTGGCGGCGGTCGAGCCGCTGTGCAACTCGGTCGGTTTCTACTTCCACGAG
AAGATCTGGAAACGCTTCGAGAAAGACGGCGCGCCGCGCCCGGCTAGCGCCCACGGCTGGCTGCACCGCCAC
GCCTGA
Translation:
MLKTLTFTVMHFIIAFSVAYALTGSIAVGGLVAAVEPLCNSVGFYFHEKIWKRFEKDGAPRPASAHGWLHRH
A*
AnnotationID:5360GeneID:5355
AnnotatorUID: diggins
Modification Date/Time: 2005-04-14 13:01:49
Gene Name:
Confidence Code:3
GeneProduct:putative membrane protein
Cell Localization:()
Synonyms:PA3237
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3205
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO09910.1|AE016801_229 (AE016801) Predicted membrane protein [Vibrio vulnificus CMCP6]
          Length = 154

 Score = 72.4 bits (176), Expect = 5e-13
 Identities = 29/51 (56%), Positives = 38/51 (74%)






 
Structural Features:
COG3205, Predicted membrane protein 
CD-Length = 72 residues, 100.0% aligned
Score = 99.7 bits (248), Expect = 5e-23
Identities = 47/73 (64%), Positives = 55/73 (75%), Gaps = 1/73 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:10710




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27857




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32305




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5355_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5355
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7750
                           PA3237_tr
                           translation of PA3237
                           73
                           99.99
                           99.99
                           0
                           390.0
     

     
     
196085
                           gb|AAG06625.1|AE004746_9
                           (AE004746) hypothetical protein PA3237 [Pseudomonas aeruginosa PAO1]
                           73
                           99.99
                           99.99
                           0
                           390.0
     

     
     
196087
                           gb|AAF93599.1|
                           (AE004130) hypothetical protein [Vibrio cholerae O1 biovar eltor str. N16961]
                           128
                           28.12
                           37.50
                           56
                           173.0
     

     
     
196086
                           dbj|BAC60910.1|
                           (AP005082) hypothetical protein [Vibrio parahaemolyticus]
                           137
                           24.08
                           33.57
                           67
                           181.0
     

     
     
196088
                           gb|AAO09910.1|AE016801_229
                           (AE016801) Predicted membrane protein [Vibrio vulnificus CMCP6]
                           161
                           20.49
                           27.32
                           95
                           173.0
     

     






      

          
GC ORFID: 48357How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3237Glimmer Score: 

          
Start: 3009674Stop: 3009895

          
Length: 222


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3237 translation of PA3237Homolog Bit Score 154.0

          
Other Homologs:  t_PA3237 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTCAAGACCCTGACCTTCACCGTCATGCACTTCATCATCGCCTTCAGCGTGGCCTATGCGCTGACCGGC 
AGCATAGCGGTCGGCGGGCTGGTGGCGGCGGTCGAGCCGCTGTGCAACTCGGTCGGTTTCTACTTCCACGAG 
AAGATCTGGAAACGCTTCGAGAAAGACGGCGCGCCGCGCCCGGCTAGCGCCCACGGCTGGCTGCACCGCCAC 
GCCTGA