ViewGene
Locus Name:
GeneID:
Location:

GeneID:5354
TrivialName: PA14_24650
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_24650
PAO1 Ortholog Locus:PA3049
Sequence Length:213
Protein Length:70
Start: 2154952
Stop: 2154740
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06437.1|AE004730_1 (AE004730) ribosome modulation factor [Pseudomonas aeruginosa PAO1]
Identities = 70/70 (100%), Positives = 70/70 (100%)
Sequence:
ATGAGAAGACTTAAGCGTGATCCGTTGGAAaGAGCCTTCTTGCGTGGTTATCAGAACGGCATAACCGGTAAA
TCTCGTGATCTTTGTCCGTTCACCCATCCTACGACGCGGCAGTCCTGGCTCAACGGCTGGCGCGAGGGCCGT
GGCGACAACTGGGACGGCCTCACTGGCACGGCCGGCTTACAACGTCTCAATCAACTCCAGCACGTGTAA
Translation:
MRRLKRDPLERAFLRGYQNGITGKSRDLCPFTHPTTRQSWLNGWREGRGDNWDGLTGTAGLQRLNQLQHV*
AnnotationID:5359GeneID:5354
AnnotatorUID: diggins
Modification Date/Time: 2004-11-24 06:06:37
Gene Name:rmf
Confidence Code:2
GeneProduct:rpfam04957, RMF, Ribosome modulation factor.
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam04957
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO55824.1| (AE016864) ribosome modulation factor-related protein
          [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 71

 Score =  127 bits (318), Expect = 2e-29
 Identities = 55/70 (78%), Positives = 63/70 (90%)

>gb|AAN54907.1|AE015629_1 (AE015629) ribosome modulation factor [Shewanella oneidensis
          MR-1]
          Length = 58

 Score = 65.5 bits (158), Expect = 7e-11
 Identities = 28/55 (50%), Positives = 39/55 (70%)








 
Structural Features:
pfam04957, RMF, Ribosome modulation factor. 






   
Genomic Context:






   
Comment:


















    ReferenceID:10708




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27855




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36001




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5354_cdd.html


    		




 
URL:

















    ReferenceID:36490




  
Author/Investigator(s):
        Yamagishi M, Matsushima H, Wada A, Sakagami M, Fujita N, Ishihama A.





  
Title:
        Regulation of the Escherichia coli rmf gene encoding the ribosome modulation factor: growth phase- and growth rate-dependent control.




  
PubMed:
        8440252


MedLine:
        




    
Source:
EMBO J. 1993 Feb;12(2):625-30.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8440252









           
Homologs By Global Alignment 

           

       



     
Gene ID:5354
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7749
                           PA3049_tr
                           translation of PA3049
                           70
                           99.99
                           99.99
                           0
                           390.0
     

     
     
196083
                           gb|AAG06437.1|AE004730_1
                           (AE004730) ribosome modulation factor [Pseudomonas aeruginosa PAO1]
                           70
                           99.99
                           99.99
                           0
                           390.0
     

     
     
196084
                           gb|AAO55824.1|
                           (AE016864) ribosome modulation factor-related protein [Pseudomonas syringae pv. tomato str. DC3000]
                           71
                           77.46
                           88.73
                           1
                           318.0
     

     






      

          
GC ORFID: 48356How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3049Glimmer Score: 

          
Start: 2798977Stop: 2799189

          
Length: 213


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA3049 translation of PA3049Homolog Bit Score 154.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene360 (ORF: BLASTX 127.0)

          
GC ORF Sequence

           
ATGAGAAGACTTAAGCGTGATCCGTTGGAAaGAGCCTTCTTGCGTGGTTATCAGAACGGCATAACCGGTAAA 
TCTCGTGATCTTTGTCCGTTCACCCATCCTACGACGCGGCAGTCCTGGCTCAACGGCTGGCGCGAGGGCCGT 
GGCGACAACTGGGACGGCCTCACTGGCACGGCCGGCTTACAACGTCTCAATCAACTCCAGCACGTGTAA