ViewGene

Locus Name:
GeneID:
Location:

GeneID:5353
TrivialName: PA14_53840
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_53840
PAO1 Ortholog Locus:PA0805
Sequence Length:228
Protein Length:75
Start: 4774171
Stop: 4774398
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04194.1|AE004515_10 (AE004515) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 75/75 (100%), Positives = 75/75 (100%)
Sequence:
ATGTCTATTCAACATCGTACTCAGGATGCAATTCGCACCCTAACCGCCGCATTTGCGCCGTTCGACTGCCTG
ATCCAGGCAACTCGTAAAGGAAACTTCAGTTTCACCATCGTTGACCAGCATGGCGTGGCCTGCCACAGCGAG
CGCCTGTATCCGGAGCAGTACGACGACTCCGGCAAAATGGAAGAAGTGATCAATCGAGTTCGCAAGAAAACA
CTGGCTGCCTGA
Translation:
MSIQHRTQDAIRTLTAAFAPFDCLIQATRKGNFSFTIVDQHGVACHSERLYPEQYDDSGKMEEVINRVRKKT
LAA*
AnnotationID:5358GeneID:5353
AnnotatorUID: danlee
Modification Date/Time: 2004-04-16 17:05:05
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0805
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:10706
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:27853
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:5353

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7748 PA0805_tr translation of PA0805 75 99.99 99.99 0 389.0
196082 gb|AAG04194.1|AE004515_10 (AE004515) hypothetical protein PA0805 [Pseudomonas aeruginosa PAO1] 75 99.99 99.99 0 389.0
GC ORFID: 48355How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0805Glimmer Score:
Start: 179736Stop: 179509
Length: 228
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0805 translation of PA0805Homolog Bit Score 154.0
Other Homologs:
GC ORF Sequence
ATGTCTATTCAACATCGTACTCAGGATGCAATTCGCACCCTAACCGCCGCATTTGCGCCGTTCGACTGCCTG
ATCCAGGCAACTCGTAAAGGAAACTTCAGTTTCACCATCGTTGACCAGCATGGCGTGGCCTGCCACAGCGAG
CGCCTGTATCCGGAGCAGTACGACGACTCCGGCAAAATGGAAGAAGTGATCAATCGAGTTCGCAAGAAAACA
CTGGCTGCCTGA