ViewGene
Locus Name:
GeneID:
Location:

GeneID:5352
TrivialName: PA14_54460
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_54460
PAO1 Ortholog Locus:
Sequence Length:453
Protein Length:150
Start: 4829099
Stop: 4828647
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAN67047.1|AE016333_8 (AE016779) hypothetical protein [Pseudomonas putida KT2440]
Identities = 79/148 (53%), Positives = 96/148 (64%)
Sequence:
GTGTCCAGCCGGATTGAGCCGTTCGAATGCCGCTGGCGGGTCTCTCCGATCCTGCTGGCGGCGAGCCTGGCA
CTGTGGGCCCTGGCGCTGCTGTCGATCCTGCTGGCGGCGCTGCCGGTCTGGCTGAAGCCGCCGCTGGCGCTG
GTCTGCCTGGCCTACGGTGCCTGGGGGCTGTACCGCCAGGTACTGCTGCGCGGCTCGCGGGCCTTCCGTGGG
TTGCGCCATGACGAGCAGGGCTGGCAGCTGTGGAGCGCCGGAAGCGGCTGGCAAGCGGTGCAATTGCGCCCT
GACAGCCTGGCGCTGCCCTGGCTGATCGTACTGCGCGTGCGCCTGCCGGGCCGCTGGCGCATCTTTGGCTGC
TGTATCCCGGCCGATGCATTGGGCGCCGACAGCCATCGGCGCCTGCGTGTCCGCCTGCGCTTCAGTCGCCGT
AGATGGGCGGCACCAGGATAG
Translation:
MSSRIEPFECRWRVSPILLAASLALWALALLSILLAALPVWLKPPLALVCLAYGAWGLYRQVLLRGSRAFRG
LRHDEQGWQLWSAGSGWQAVQLRPDSLALPWLIVLRVRLPGRWRIFGCCIPADALGADSHRRLRVRLRFSRR
RWAAPG*
AnnotationID:5357GeneID:5352
AnnotatorUID: danlee
Modification Date/Time: 2006-05-02 15:03:51
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|84322832|ref|ZP_00970913.1|  hypothetical protein Paer2_01005964 [Pseudomonas aeruginosa 2192]
Length=150

 Score =  217 bits (553),  Expect = 1e-55
 Identities = 148/150 (98%), Positives = 149/150 (99%), Gaps = 0/150 (0%)

gi|84316727|ref|ZP_00965193.1|  hypothetical protein PaerC_01005496 [Pseudomonas aeruginosa C3719]
Length=150

 Score =  216 bits (549),  Expect = 3e-55
 Identities = 146/150 (97%), Positives = 147/150 (98%), Gaps = 0/150 (0%)

gi|94418136|ref|ZP_01297952.1|  hypothetical protein PaerP_01000287 [Pseudomonas aeruginosa PA7]
Length=126

 Score =  174 bits (442),  Expect = 7e-43
 Identities = 97/107 (90%), Positives = 99/107 (92%), Gaps = 2/107 (1%)






 
Structural Features:






   
Genomic Context:






   
Comment:
ORF present in PAO1 but not annotated.
Nucleotide sequence is 446/453 (98%) identical.


















    ReferenceID:15318




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27852




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5352
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
196080
                           gb|AAN67047.1|AE016333_8
                           (AE016779) hypothetical protein [Pseudomonas putida KT2440]
                           152
                           51.31
                           63.15
                           2
                           378.0
     

     
     
196081
                           gb|AAO57682.1|
                           (AE016871) hypothetical protein PSPTO4226 [Pseudomonas syringae pv. tomato str. DC3000]
                           155
                           50.32
                           61.93
                           6
                           375.0
     

     






      

          
GC ORFID: 48354How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: psyr_15may02_Scaffold16_revised_gene270Glimmer Score: 

          
Start: 124808Stop: 125260

          
Length: 453


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: psyr_15may02_Scaffold16_revised_gene2702Homolog Bit Score 155.0

          
Other Homologs:  psyr_15may02_Scaffold16_revised_gene270 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGTCCAGCCGGATTGAGCCGTTCGAATGCCGCTGGCGGGTCTCTCCGATCCTGCTGGCGGCGAGCCTGGCA 
CTGTGGGCCCTGGCGCTGCTGTCGATCCTGCTGGCGGCGCTGCCGGTCTGGCTGAAGCCGCCGCTGGCGCTG 
GTCTGCCTGGCCTACGGTGCCTGGGGGCTGTACCGCCAGGTACTGCTGCGCGGCTCGCGGGCCTTCCGTGGG 
TTGCGCCATGACGAGCAGGGCTGGCAGCTGTGGAGCGCCGGAAGCGGCTGGCAAGCGGTGCAATTGCGCCCT 
GACAGCCTGGCGCTGCCCTGGCTGATCGTACTGCGCGTGCGCCTGCCGGGCCGCTGGCGCATCTTTGGCTGC 
TGTATCCCGGCCGATGCATTGGGCGCCGACAGCCATCGGCGCCTGCGTGTCCGCCTGCGCTTCAGTCGCCGT 
AGATGGGCGGCACCAGGATAG