ViewGene
Locus Name:
GeneID:
Location:

GeneID:5350
TrivialName: PA14_18680
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_18680
PAO1 Ortholog Locus:PA3530
Sequence Length:222
Protein Length:73
Start: 1608283
Stop: 1608062
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06918.1|AE004773_7 (AE004773) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 73/73 (100%), Positives = 73/73 (100%)
Sequence:
ATGTACGTCTGCCTCTGCCAAGGTGTTACCGACAACCAGATCCGCGATGCCATCTACGAAGGCTGCTGCAGC
TATCGTGAGGTTCGCGAAGCCACCGGCGTCGGTACCCAGTGCGGCAAGTGCGCATGCCTGGCCAAGCAGGTG
GTACGCGAAACCCTCAACGACCTGCAGAGTGCCCAGCCGGTACCGGCGTTCGGGACTACGGCGTTCGTCGCT
GCCTGA
Translation:
MYVCLCQGVTDNQIRDAIYEGCCSYREVREATGVGTQCGKCACLAKQVVRETLNDLQSAQPVPAFGTTAFVA
A*
AnnotationID:5355GeneID:5350
AnnotatorUID: diggins
Modification Date/Time: 2005-04-19 17:05:16
Gene Name:
Confidence Code:3
GeneProduct:putative bacterioferritin-associated ferredoxin
Cell Localization:()
Synonyms:bfd
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam04324,COG2906
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57615.1| (AE016870) bacterioferritin-associated ferredoxin [Pseudomonas
          syringae pv. tomato str. DC3000]
          Length = 72

 Score =  107 bits (267), Expect = 2e-23
 Identities = 48/67 (71%), Positives = 56/67 (83%)

>gb|AAD19701.1| (AF121138) bacterioferritin-associated ferredoxin [Azotobacter
          vinelandii]
          Length = 73

 Score = 95.9 bits (237), Expect = 5e-20
 Identities = 41/55 (74%), Positives = 47/55 (85%)








 
Structural Features:
pfam04324, Fer2_BFD, BFD-like [2Fe-2S] binding domain. 
CD-Length = 53 residues, 100.0% aligned
Score = 56.4 bits (136), Expect = 6e-10
Identities = 23/53 (43%), Positives = 31/53 (58%)

COG2906, Bfd, Bacterioferritin-associated ferredoxin 
[Inorganic ion transport and metabolism]
CD-Length = 63 residues, 100.0% aligned
Score = 71.5 bits (175), Expect = 2e-14
Identities = 32/63 (50%), Positives = 43/63 (68%)






   
Genomic Context:






   
Comment:


















    ReferenceID:10700




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27848




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32033




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5350_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5350
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7746
                           PA3530_tr
                           translation of PA3530
                           73
                           99.99
                           99.99
                           0
                           391.0
     

     
     
196072
                           gb|AAG06918.1|AE004773_7
                           (AE004773) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           73
                           99.99
                           99.99
                           0
                           391.0
     

     
     
196073
                           gb|AAO57615.1|
                           (AE016870) bacterioferritin-associated ferredoxin [Pseudomonas syringae pv. tomato str. DC3000]
                           73
                           69.86
                           82.19
                           1
                           269.0
     

     
     
196074
                           gb|AAN66708.1|AE016299_4
                           (AE016778) bacterioferritin-associated ferredoxin, putative [Pseudomonas putida KT2440]
                           76
                           68.42
                           75.00
                           7
                           270.0
     

     






      

          
GC ORFID: 48352How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3530Glimmer Score: 

          
Start: 3345651Stop: 3345872

          
Length: 222


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3530 translation of PA3530Homolog Bit Score 155.0

          
Other Homologs:  psyr_15may02_Scaffold5_revised_gene6119 (ORF: BLASTX 106.0), t_PA3530 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTACGTCTGCCTCTGCCAAGGTGTTACCGACAACCAGATCCGCGATGCCATCTACGAAGGCTGCTGCAGC 
TATCGTGAGGTTCGCGAAGCCACCGGCGTCGGTACCCAGTGCGGCAAGTGCGCATGCCTGGCCAAGCAGGTG 
GTACGCGAAACCCTCAACGACCTGCAGAGTGCCCAGCCGGTACCGGCGTTCGGGACTACGGCGTTCGTCGCT 
GCCTGA