ViewGene
Locus Name:
GeneID:
Location:

GeneID:535
TrivialName: PA14_06750
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_06750
PAO1 Ortholog Locus:PA0519
Sequence Length:1707
Protein Length:568
Start: 590077
Stop: 588371
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03908.1|AE004488_12 (AE004488) nitrite reductase precursor [Pseudomonas aeruginosa PAO1]
Identities = 566/568 (99%), Positives = 567/568 (99%)
Sequence:
ATGCCATTTGGCAAGCCACTGGTGGGCACCTTGCTCGCCTCGCTGACGCTGCTGGGCCTGGCCACCGCTCAC
GCCAAGGACGACATGAAAGCCGCCGAGCAATACCAGGGTGCCGCTTCCGCCGTCGATCCCACTCACGTGGTG
CGCACCAACGGTGCCCCCGACATGAGTGAAAGCGAGTTCAACGAGGCCAAGCAGATCTACTTCCAACGCTGC
GCCGGTTGCCACGGCGTCCTGCGCAAGGGCGCCACCGGCAAGCCGCTGACCCCGGACATCACCCAGCAACGC
GGCCAGCAATACCTGGAAGCGCTGATCACCTACGGCACCCCGCTGGGCATGCCGAACTGGGGCAGCTCCGGC
GAGCTGAGCAAGGACCAGATCACCCTGATGGCCAAGTACATCCAGCACACCCCGCCGCAACCGCCGGAGTGG
GGCATGCCGGAGATGCGCGAATCGTGGAAGGTGCTGGTGAAGCCGGAGGACCGGCCGAAGAAACAGCTCAAC
GACCTCGACCTGCCCAACCTGTTCTCGGTGACCCTGCGCGACGCCGGGCAGATCGCCCTGGTCGACGGCGAC
AGCAAGAAGATCGTCAAGGTCATCGATACCGGCTATGCCGTGCATATCTCGCGGATGTCCGCTTCCGGCCGC
TATCTGCTGGTGATCGGCCGCGACGCGCGGATCGACATGATCGACCTGTGGGCCAAGGAGCCGACCAAGGTC
GCCGAGATCAAGATCGGCATCGAGGCGCGCTCGGTGGAAAGCTCCAAGTTCAAGGGCTACGAGGACCGCTAC
ACCATCGCCGGCGCCTACTGGCCGCCGCAGTTCGCGATCATGGACGGCGAGACCCTGGAGCCGAAGCAGATC
GTCTCCACCCGCGGCATGACCGTAGACACCCAGACCTACCACCCGGAACCGCGCGTGGCGGCGATCATCGCC
TCCCACGAGCACCCCGAGTTCATCGTCAACGTGAAGGAGACCGGCAAGGTCCTGCTGGTCAACTACAAGGAT
ATCGACAACCTCACCGTCACCAGCATCGGTGCGGCGCCGTTCCTCCACGACGGCGGCTGGGACAGCAGCCAC
CGCTACTTCATGACCGCCGCCAACAACTCCAACAAGGTTGCCGTGATCGACTCCAAGGACCGTCGCCTGTCG
GCCCTGGTCGACGTCGGCAAGACCCCGCACCCGGGGCGTGGCGCCAACTTCGTGCATCCCAAGTACGGCCCG
GTGTGGAGCACCAGCCACCTGGGCGACGGCAGCATCTCGCTGATCGGCACCGATCCGAAGAACCATCCGCAG
TACGCCTGGAAGAAAGTCGCCGAGCTACAGGGCCAGGGCGGCGGCTCGCTGTTCATCAAGACCCATCCGAAG
TCCTCGCACCTCTACGTCGACACCACCTTCAACCCCGACGCCAGGATCAGCCAGAGCGTCGCGGTGTTCGAC
CTGAAGAACCTCGACGCCAAGTACCAGGTGCTGCCGATCGCCGAATGGGCCGATCTCGGCGAAGGCGCCAAG
CGGGTGGTGCAGCCCGAGTACAACAAGCGCGGCGATGAAGTCTGGTTCTCGGTGTGGAACGGCAAGAACGAC
AGCTCCGCGCTGGTGGTGGTGGACGACAAGACCCTGAAGCTCAAGGCCGTGGTCAAGGACCCGCGGCTGATC
ACCCCGACCGGCAAGTTCAACGTCTACAACACCCAGCACGACGTGTACTGA
Translation:
MPFGKPLVGTLLASLTLLGLATAHAKDDMKAAEQYQGAASAVDPTHVVRTNGAPDMSESEFNEAKQIYFQRC
AGCHGVLRKGATGKPLTPDITQQRGQQYLEALITYGTPLGMPNWGSSGELSKDQITLMAKYIQHTPPQPPEW
GMPEMRESWKVLVKPEDRPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGR
YLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQI
VSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSH
RYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQ
YAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAK
RVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPRLITPTGKFNVYNTQHDVY*
AnnotationID:544GeneID:535
AnnotatorUID: diggins
Modification Date/Time: 2005-03-28 12:12:26
Gene Name:nirS
Confidence Code:1
GeneProduct:nitrite reductase precursor
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:cytochrome cd1 nitrite reductase
Functional Category Confidence Code:5
COGs:pfam02239
Secondary Functional Category(ies):
EC Number:1.9.3.2
Status:ACTIVE
Pathway:






 
Homology:
>dbj|BAC66172.1| (AB092344) nitrite reductase [Burkholderia cepacia]
          Length = 568

 Score = 1154 bits (2986), Expect = 0.0
 Identities = 566/568 (99%), Positives = 567/568 (99%)

>gb|AAG34381.1|AF197466_4 (AF197466) cd1 nitrite reductase; NirS [Pseudomonas fluorescens]
          Length = 559

 Score =  900 bits (2325), Expect = 0.0
 Identities = 427/522 (81%), Positives = 477/522 (91%)

>emb|CAA62740.1| (X91394) cytochrome cd1 nitrite reductase [Ralstonia eutropha]
          Length = 554

 Score =  752 bits (1941), Expect = 0.0
 Identities = 348/516 (67%), Positives = 436/516 (84%), Gaps = 2/516 (0%)








 
Structural Features:
pfam02239, Cytochrome D1 heme domain. 
CD-Length = 369 residues, 100.0% aligned
Score =  502 bits (1294), Expect = 4e-143
Identities = 224/397 (56%), Positives = 270/397 (68%), Gaps = 30/397 (7%)







   
Genomic Context:






   
Comment:


















    ReferenceID:1073




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18215




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33827




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:535_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:535
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
933
                           PA0519_tr
                           translation of PA0519
                           568
                           99.64
                           99.82
                           0
                           2986.0
     

     
     
37485
                           gb|AAG03908.1|AE004488_12
                           (AE004488) nitrite reductase precursor [Pseudomonas aeruginosa PAO1]
                           568
                           99.64
                           99.82
                           0
                           2986.0
     

     
     
37486
                           emb|CAA34471.1|
                           (X16452) nitrite reductase (NAD(P)H) [Pseudomonas aeruginosa]
                           568
                           99.64
                           99.82
                           0
                           2986.0
     

     
     
37487
                           dbj|BAC66172.1|
                           (AB092344) nitrite reductase [Burkholderia cepacia]
                           568
                           99.64
                           99.82
                           0
                           2986.0
     

     
     
37488
                           gb|AAG34381.1|AF197466_4
                           (AF197466) cd1 nitrite reductase; NirS [Pseudomonas fluorescens]
                           574
                           75.60
                           85.36
                           21
                           2323.0
     

     






      

          
GC ORFID: 43537How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0519Glimmer Score: 

          
Start: 6391419Stop: 6389713

          
Length: 1707


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0519 translation of PA0519Homolog Bit Score 1154.0

          
Other Homologs:  t_PA0519 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCATTTGGCAAGCCACTGGTGGGCACCTTGCTCGCCTCGCTGACGCTGCTGGGCCTGGCCACCGCTCAC 
GCCAAGGACGACATGAAAGCCGCCGAGCAATACCAGGGTGCCGCTTCCGCCGTCGATCCCACTCACGTGGTG 
CGCACCAACGGTGCCCCCGACATGAGTGAAAGCGAGTTCAACGAGGCCAAGCAGATCTACTTCCAACGCTGC 
GCCGGTTGCCACGGCGTCCTGCGCAAGGGCGCCACCGGCAAGCCGCTGACCCCGGACATCACCCAGCAACGC 
GGCCAGCAATACCTGGAAGCGCTGATCACCTACGGCACCCCGCTGGGCATGCCGAACTGGGGCAGCTCCGGC 
GAGCTGAGCAAGGACCAGATCACCCTGATGGCCAAGTACATCCAGCACACCCCGCCGCAACCGCCGGAGTGG 
GGCATGCCGGAGATGCGCGAATCGTGGAAGGTGCTGGTGAAGCCGGAGGACCGGCCGAAGAAACAGCTCAAC 
GACCTCGACCTGCCCAACCTGTTCTCGGTGACCCTGCGCGACGCCGGGCAGATCGCCCTGGTCGACGGCGAC 
AGCAAGAAGATCGTCAAGGTCATCGATACCGGCTATGCCGTGCATATCTCGCGGATGTCCGCTTCCGGCCGC 
TATCTGCTGGTGATCGGCCGCGACGCGCGGATCGACATGATCGACCTGTGGGCCAAGGAGCCGACCAAGGTC 
GCCGAGATCAAGATCGGCATCGAGGCGCGCTCGGTGGAAAGCTCCAAGTTCAAGGGCTACGAGGACCGCTAC 
ACCATCGCCGGCGCCTACTGGCCGCCGCAGTTCGCGATCATGGACGGCGAGACCCTGGAGCCGAAGCAGATC 
GTCTCCACCCGCGGCATGACCGTAGACACCCAGACCTACCACCCGGAACCGCGCGTGGCGGCGATCATCGCC 
TCCCACGAGCACCCCGAGTTCATCGTCAACGTGAAGGAGACCGGCAAGGTCCTGCTGGTCAACTACAAGGAT 
ATCGACAACCTCACCGTCACCAGCATCGGTGCGGCGCCGTTCCTCCACGACGGCGGCTGGGACAGCAGCCAC 
CGCTACTTCATGACCGCCGCCAACAACTCCAACAAGGTTGCCGTGATCGACTCCAAGGACCGTCGCCTGTCG 
GCCCTGGTCGACGTCGGCAAGACCCCGCACCCGGGGCGTGGCGCCAACTTCGTGCATCCCAAGTACGGCCCG 
GTGTGGAGCACCAGCCACCTGGGCGACGGCAGCATCTCGCTGATCGGCACCGATCCGAAGAACCATCCGCAG 
TACGCCTGGAAGAAAGTCGCCGAGCTACAGGGCCAGGGCGGCGGCTCGCTGTTCATCAAGACCCATCCGAAG 
TCCTCGCACCTCTACGTCGACACCACCTTCAACCCCGACGCCAGGATCAGCCAGAGCGTCGCGGTGTTCGAC 
CTGAAGAACCTCGACGCCAAGTACCAGGTGCTGCCGATCGCCGAATGGGCCGATCTCGGCGAAGGCGCCAAG 
CGGGTGGTGCAGCCCGAGTACAACAAGCGCGGCGATGAAGTCTGGTTCTCGGTGTGGAACGGCAAGAACGAC 
AGCTCCGCGCTGGTGGTGGTGGACGACAAGACCCTGAAGCTCAAGGCCGTGGTCAAGGACCCGCGGCTGATC 
ACCCCGACCGGCAAGTTCAACGTCTACAACACCCAGCACGACGTGTACTGA