ViewGene
Locus Name:
GeneID:
Location:

GeneID:5349
TrivialName: PA14_25140
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_25140
PAO1 Ortholog Locus:PA3009
Sequence Length:234
Protein Length:77
Start: 2200088
Stop: 2200321
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06397.1|AE004726_3 (AE004726) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 77/77 (100%), Positives = 77/77 (100%)
Sequence:
ATGCCAACATCCTTCCTTGAAATCGTAGAAATGCCCGACGGGCGCATCGTGCTGCGTCGCGCCGATGACGAG
GAGGCGTTGGTGACCCTGGAGTTCTCCGGGGACGCGAAGAATTTCCTGCAAGGCCAGCATGTCGAAGTGGCC
AAGGCCATGTTCAATGTCGGCGTGCAAATGGCCGGTCGTCTTGCCGAGGGCGAGATGGAACACGACGAAGGC
CCCCGCGTCCTGCACTGA
Translation:
MPTSFLEIVEMPDGRIVLRRADDEEALVTLEFSGDAKNFLQGQHVEVAKAMFNVGVQMAGRLAEGEMEHDEG
PRVLH*
AnnotationID:5354GeneID:5349
AnnotatorUID: diggins
Modification Date/Time: 2005-04-11 18:06:45
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3009
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:10698




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27846




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5349
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7745
                           PA3009_tr
                           translation of PA3009
                           77
                           99.99
                           99.99
                           0
                           392.0
     

     
     
196069
                           gb|AAG06397.1|AE004726_3
                           (AE004726) hypothetical protein PA3009 [Pseudomonas aeruginosa PAO1]
                           77
                           99.99
                           99.99
                           0
                           392.0
     

     
     
196071
                           gb|AAN67754.1|AE016406_9
                           (AE016782) conserved hypothetical protein [Pseudomonas putida KT2440]
                           77
                           80.51
                           89.61
                           0
                           311.0
     

     
     
196070
                           gb|AAO56987.1|
                           (AE016868) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           87
                           71.26
                           79.31
                           10
                           313.0
     

     






      

          
GC ORFID: 48351How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3009Glimmer Score: 

          
Start: 2753839Stop: 2753606

          
Length: 234


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3009 translation of PA3009Homolog Bit Score 155.0

          
Other Homologs:  psyr_15may02_Scaffold9_revised_gene8049 (ORF: BLASTX 125.0), t_PA3009 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCAACATCCTTCCTTGAAATCGTAGAAATGCCCGACGGGCGCATCGTGCTGCGTCGCGCCGATGACGAG 
GAGGCGTTGGTGACCCTGGAGTTCTCCGGGGACGCGAAGAATTTCCTGCAAGGCCAGCATGTCGAAGTGGCC 
AAGGCCATGTTCAATGTCGGCGTGCAAATGGCCGGTCGTCTTGCCGAGGGCGAGATGGAACACGACGAAGGC 
CCCCGCGTCCTGCACTGA