ViewGene
Locus Name:
GeneID:
Location:

GeneID:5348
TrivialName: PA14_25370
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_25370
PAO1 Ortholog Locus:PA2992
Sequence Length:228
Protein Length:75
Start: 2218707
Stop: 2218934
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06380.1|AE004724_9 (AE004724) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 75/75 (100%), Positives = 75/75 (100%)
Sequence:
ATGACCTGGCTACTGGTCTTCGTCATCATGCTGCTGGTGGTCTTCGGCATGTCCATCGGGGTCATCATGGGC
CGCAAGCCGATCGCCGGTTCCTGCGGCGGCATCGCCAACCTGGGGATCGAGAAGGAATGCTCGATCTGCGGC
GGCGACCGGCAGAAATGCGAGGAAGCCAACCGCGACGAATCTGTAGTGCCCGGAAAACTCGCCTACGACGCG
ACCAAACGCTAA
Translation:
MTWLLVFVIMLLVVFGMSIGVIMGRKPIAGSCGGIANLGIEKECSICGGDRQKCEEANRDESVVPGKLAYDA
TKR*
AnnotationID:5353GeneID:5348
AnnotatorUID: diggins
Modification Date/Time: 2005-04-11 13:01:52
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2992
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:10696




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27844




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36037




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5348_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5348
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7744
                           PA2992_tr
                           translation of PA2992
                           75
                           99.99
                           99.99
                           0
                           391.0
     

     
     
196068
                           gb|AAG06380.1|AE004724_9
                           (AE004724) hypothetical protein PA2992 [Pseudomonas aeruginosa PAO1]
                           75
                           99.99
                           99.99
                           0
                           391.0
     

     






      

          
GC ORFID: 48350How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2992Glimmer Score: 

          
Start: 2735218Stop: 2734991

          
Length: 228


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA2992 translation of PA2992Homolog Bit Score 155.0

          
Other Homologs:  

          
GC ORF Sequence

           
ATGACCTGGCTACTGGTCTTCGTCATCATGCTGCTGGTGGTCTTCGGCATGTCCATCGGGGTCATCATGGGC 
CGCAAGCCGATCGCCGGTTCCTGCGGCGGCATCGCCAACCTGGGGATCGAGAAGGAATGCTCGATCTGCGGC 
GGCGACCGGCAGAAATGCGAGGAAGCCAACCGCGACGAATCTGTAGTGCCCGGAAAACTCGCCTACGACGCG 
ACCAAACGCTAA