ViewGene
Locus Name:
GeneID:
Location:

GeneID:5347
TrivialName: PA14_33230
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_33230
PAO1 Ortholog Locus:PA2429
Sequence Length:246
Protein Length:81
Start: 2908307
Stop: 2908062
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05817.1|AE004670_5 (AE004670) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 80/81 (98%), Positives = 80/81 (98%)
Sequence:
ATGCAAGCGTTTTCCAAACAGCAACTCATCGATGCGCTGAATGCCCAGAGCAGCGACCTGGCCACCCTGCAG
AGCCTGGTCATGGGCCTCTACCTGTGGATTCGCGACAGCCATGGCCAGGCCAGCGTCGATGCGGCCTTCCAG
CGCGCCCGCGAGGAGGCCAGGCAATTCCGCCAGCAGAGCGGCAACCAGGCTGACGAGCGATTGATCCTGCAA
CTGGCGGAAATCGTCCGCGAACAACCCTGA
Translation:
MQAFSKQQLIDALNAQSSDLATLQSLVMGLYLWIRDSHGQASVDAAFQRAREEARQFRQQSGNQADERLILQ
LAEIVREQP*
AnnotationID:5352GeneID:5347
AnnotatorUID: danlee
Modification Date/Time: 2004-03-08 14:02:21
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA2429
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:10694




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27842




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5347
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7743
                           PA2429_tr
                           translation of PA2429
                           81
                           98.76
                           98.76
                           0
                           391.0
     

     
     
196067
                           gb|AAG05817.1|AE004670_5
                           (AE004670) hypothetical protein PA2429 [Pseudomonas aeruginosa PAO1]
                           81
                           98.76
                           98.76
                           0
                           391.0
     

     






      

          
GC ORFID: 48349How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2429Glimmer Score: 

          
Start: 2045609Stop: 2045854

          
Length: 246


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2429 translation of PA2429Homolog Bit Score 155.0

          
Other Homologs:  t_PA2429 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAAGCGTTTTCCAAACAGCAACTCATCGATGCGCTGAATGCCCAGAGCAGCGACCTGGCCACCCTGCAG 
AGCCTGGTCATGGGCCTCTACCTGTGGATTCGCGACAGCCATGGCCAGGCCAGCGTCGATGCGGCCTTCCAG 
CGCGCCCGCGAGGAGGCCAGGCAATTCCGCCAGCAGAGCGGCAACCAGGCTGACGAGCGATTGATCCTGCAA 
CTGGCGGAAATCGTCCGCGAACAACCCTGA