ViewGene
Locus Name:
GeneID:
Location:

GeneID:5346
TrivialName: PA14_33510
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_33510
PAO1 Ortholog Locus:PA2412
Sequence Length:219
Protein Length:72
Start: 2949029
Stop: 2949247
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05800.1|AE004668_10 (AE004668) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 72/72 (100%), Positives = 72/72 (100%)
Sequence:
ATGACTTCAGTGTTCGACCGTGACGACATCCAGTTCCAGGTAGTGGTCAACCATGAGGAGCAGTATTCCATC
TGGCCGGAATACAAGGAGATTCCCCAGGGCTGGCGGGCGGCCGGCAAGAGCGGCCTGAAGAAGGACTGCCTG
GCCTACATCGAGGAAGTCTGGACCGACATGCGCCCGCTGAGCCTGCGCCAGCACATGGACAAGGCGGCCGGC
TGA
Translation:
MTSVFDRDDIQFQVVVNHEEQYSIWPEYKEIPQGWRAAGKSGLKKDCLAYIEEVWTDMRPLSLRQHMDKAAG
*
AnnotationID:5351GeneID:5346
AnnotatorUID: diggins
Modification Date/Time: 2005-03-06 10:10:50
Gene Name:
Confidence Code:3
GeneProduct:putative MbtH-like protein
Cell Localization:()
Synonyms:PA2412
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(3) Antibiotic resistance and susceptibility
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam03621
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO55654.1| (AE016863) MbtH-like protein [Pseudomonas syringae pv. tomato
          str. DC3000]
          Length = 75

 Score =  127 bits (318), Expect = 2e-29
 Identities = 57/68 (83%), Positives = 61/68 (89%)








 
Structural Features:
pfam03621, MbtH, MbtH-like protein. 
CD-Length = 69 residues,  97.1% aligned
Score =  100 bits (251), Expect = 3e-23
Identities = 37/67 (55%), Positives = 48/67 (71%)






   
Genomic Context:






   
Comment:


















    ReferenceID:10692




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27840




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32956




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5346_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5346
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7742
                           PA2412_tr
                           translation of PA2412
                           72
                           99.99
                           99.99
                           0
                           391.0
     

     
     
196064
                           gb|AAG05800.1|AE004668_10
                           (AE004668) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           72
                           99.99
                           99.99
                           0
                           391.0
     

     
     
196065
                           gb|AAN69402.1|AE016576_12
                           (AE016788) conserved hypothetical protein [Pseudomonas putida KT2440]
                           73
                           86.30
                           90.41
                           1
                           343.0
     

     
     
196066
                           gb|AAO55654.1|
                           (AE016863) MbtH-like protein [Pseudomonas syringae pv. tomato str. DC3000]
                           75
                           76.00
                           81.33
                           3
                           316.0
     

     






      

          
GC ORFID: 48348How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2412Glimmer Score: 

          
Start: 2004887Stop: 2004669

          
Length: 219


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2412 translation of PA2412Homolog Bit Score 155.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene936 (ORF: BLASTX 127.0), t_PA2412 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACTTCAGTGTTCGACCGTGACGACATCCAGTTCCAGGTAGTGGTCAACCATGAGGAGCAGTATTCCATC 
TGGCCGGAATACAAGGAGATTCCCCAGGGCTGGCGGGCGGCCGGCAAGAGCGGCCTGAAGAAGGACTGCCTG 
GCCTACATCGAGGAAGTCTGGACCGACATGCGCCCGCTGAGCCTGCGCCAGCACATGGACAAGGCGGCCGGC 
TGA