ViewGene
Locus Name:
GeneID:
Location:

GeneID:5345
TrivialName: PA14_24570
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_24570
PAO1 Ortholog Locus:PA3057
Sequence Length:231
Protein Length:76
Start: 2147934
Stop: 2147704
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06445.1|AE004730_9 (AE004730) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 76/76 (100%), Positives = 76/76 (100%)
Sequence:
ATGAAAGTGGAAGAACTCCCCCAAGAGGGTTTCGCCGAATGCCCCCGCTATATAACCCTGATGCGTTTCGCC
TTCCTGACCGGCCTCAGCGACCGGCCGGACCTGCTCTATGCCTGGATAGAGAGCGGCGACCTGCCGATGCGA
ACCTTCGGTACGCAACGCCTGGTGGATATGCAGAAGCTGCAAAAACGCATCGAGGAAGCAAAAAAAGGGGCC
GATTCAACCGGGTGA
Translation:
MKVEELPQEGFAECPRYITLMRFAFLTGLSDRPDLLYAWIESGDLPMRTFGTQRLVDMQKLQKRIEEAKKGA
DSTG*
AnnotationID:5350GeneID:5345
AnnotatorUID: diggins
Modification Date/Time: 2005-04-12 09:09:06
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA3057
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:10690




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27838




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5345
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7741
                           PA3057_tr
                           translation of PA3057
                           76
                           99.99
                           99.99
                           0
                           395.0
     

     
     
196063
                           gb|AAG06445.1|AE004730_9
                           (AE004730) hypothetical protein PA3057 [Pseudomonas aeruginosa PAO1]
                           76
                           99.99
                           99.99
                           0
                           395.0
     

     






      

          
GC ORFID: 48347How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3057Glimmer Score: 

          
Start: 2805995Stop: 2806225

          
Length: 231


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3057 translation of PA3057Homolog Bit Score 156.0

          
Other Homologs:  t_PA3057 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAAGTGGAAGAACTCCCCCAAGAGGGTTTCGCCGAATGCCCCCGCTATATAACCCTGATGCGTTTCGCC 
TTCCTGACCGGCCTCAGCGACCGGCCGGACCTGCTCTATGCCTGGATAGAGAGCGGCGACCTGCCGATGCGA 
ACCTTCGGTACGCAACGCCTGGTGGATATGCAGAAGCTGCAAAAACGCATCGAGGAAGCAAAAAAAGGGGCC 
GATTCAACCGGGTGA