ViewGene

Locus Name:
GeneID:
Location:

GeneID:5343
TrivialName: PA14_42410
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_42410
PAO1 Ortholog Locus:PA1711
Sequence Length:246
Protein Length:81
Start: 3778491
Stop: 3778246
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05100.1|AE004597_14 (AE004597) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 79/81 (97%), Positives = 80/81 (98%)
Sequence:
ATGAAAATCGAATCGATTCCGCCGGTGCAGCCGTCCCAAGACGCAGGAGCCGAGGCGGTGGGGCATTTCGAG
GGGCGTTCGGTGACCCGCGCGGCCGTTCGCGGCGACGACCGTTCCAGCGTGGCCGGGCTGGCGCGCTGGCTG
GCGCGCAACGTGGCTGGCGATCCGCGCAGCGAGCAGGCCTTGCAGCGCCTCGCCGACGGCGACGGCACGCCG
CTGGAGGCGCGCACGGTCCGGCGCAGGTGA
Translation:
MKIESIPPVQPSQDAGAEAVGHFEGRSVTRAAVRGDDRSSVAGLARWLARNVAGDPRSEQALQRLADGDGTP
LEARTVRRR*
AnnotationID:5348GeneID:5343
AnnotatorUID: diggins
Modification Date/Time: 2005-02-28 07:07:29
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA1711
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:10686
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:27834
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:5343

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7739 PA1711_tr translation of PA1711 81 97.53 98.76 0 396.0
196061 gb|AAG05100.1|AE004597_14 (AE004597) hypothetical protein PA1711 [Pseudomonas aeruginosa PAO1] 81 97.53 98.76 0 396.0
GC ORFID: 48345How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1711Glimmer Score:
Start: 1175418Stop: 1175663
Length: 246
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1711 translation of PA1711Homolog Bit Score 157.0
Other Homologs:
GC ORF Sequence
ATGAAAATCGAATCGATTCCGCCGGTGCAGCCGTCCCAAGACGCAGGAGCCGAGGCGGTGGGGCATTTCGAG
GGGCGTTCGGTGACCCGCGCGGCCGTTCGCGGCGACGACCGTTCCAGCGTGGCCGGGCTGGCGCGCTGGCTG
GCGCGCAACGTGGCTGGCGATCCGCGCAGCGAGCAGGCCTTGCAGCGCCTCGCCGACGGCGACGGCACGCCG
CTGGAGGCGCGCACGGTCCGGCGCAGGTGA