ViewGene
Locus Name:
GeneID:
Location:

GeneID:5341
TrivialName: PA14_08200
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_08200
PAO1 Ortholog Locus:
Sequence Length:288
Protein Length:95
Start: 701926
Stop: 702213
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04021.1|AE004498_16 (AE004498) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 73/76 (96%), Positives = 73/76 (96%)
Sequence:
ATGGACGTCGATGGACGTGTGTCCGGCGCATATTGCCGTGTATTGATTCCGCAGCGTTGTCGAGCCAGGAAT
CGGCCGGTACAACGTAGTCATGCTTGTACAGGTGTGTCCCCCCAGGGATGCCACCTGCAACCTCAGAGCCCG
GCCCGTGTGCCGGGCTTTTTCGTTTGCATCCGACAACGGCTCGGGACGTGGAGGCTCCTCGCCGACCGCGTA
CCGCGCCACGGCCGACCGTCCTGGGGACGGGGCCAGACGACCCGCCTGGTGCGGGTCTTTTCATGTGCATAA
Translation:
MDVDGRVSGAYCRVLIPQRCRARNRPVQRSHACTGVSPQGCHLQPQSPARVPGFFVCIRQRLGTWRLLADRV
PRHGRPSWGRGQTTRLVRVFSCA*
AnnotationID:5346GeneID:5341
AnnotatorUID: danlee
Modification Date/Time: 2006-03-17 14:02:40
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|9946507|gb|AAG04021.1|  hypothetical protein PA0632 [Pseudomonas aeruginosa PAO1]
 gi|15595829|ref|NP_249323.1|  hypothetical protein PA0632 [Pseudomonas aeruginosa PAO1]
 gi|5725173|dbj|BAA83171.1|  hypothetical protein [Pseudomonas aeruginosa]
Length=76

 Score =  158 bits (399),  Expect = 7e-38
 Identities = 73/76 (96%), Positives = 73/76 (96%), Gaps = 0/76 (0%)








 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:
N-terminal 76 amino acids are 73/76=96% identical to PAO1 PA0632. 
GeneID5341 (PA14_08200) has an additional 19 amino acid C-terminus.



















    ReferenceID:10682




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27830




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5341
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7737
                           PA0632_tr
                           translation of PA0632
                           95
                           76.84
                           76.84
                           19
                           399.0
     

     
     
196056
                           gb|AAG04021.1|AE004498_16
                           (AE004498) hypothetical protein PA0632 [Pseudomonas aeruginosa PAO1]
                           95
                           76.84
                           76.84
                           19
                           399.0
     

     
     
196057
                           dbj|BAA83171.1|
                           (AB030825) hypothetical protein [Pseudomonas aeruginosa]
                           95
                           76.84
                           76.84
                           19
                           399.0
     

     






      

          
GC ORFID: 48343How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0632Glimmer Score: 

          
Start: 6503269Stop: 6503556

          
Length: 288


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA0632 translation of PA0632Homolog Bit Score 158.0

          
Other Homologs:  

          
GC ORF Sequence

           
ATGGACGTCGATGGACGTGTGTCCGGCGCATATTGCCGTGTATTGATTCCGCAGCGTTGTCGAGCCAGGAAT 
CGGCCGGTACAACGTAGTCATGCTTGTACAGGTGTGTCCCCCCAGGGATGCCACCTGCAACCTCAGAGCCCG 
GCCCGTGTGCCGGGCTTTTTCGTTTGCATCCGACAACGGCTCGGGACGTGGAGGCTCCTCGCCGACCGCGTA 
CCGCGCCACGGCCGACCGTCCTGGGGACGGGGCCAGACGACCCGCCTGGTGCGGGTCTTTTCATGTGCATAA