ViewGene

Locus Name:
GeneID:
Location:

GeneID:5340
TrivialName: PA14_43900
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_43900
PAO1 Ortholog Locus:PA1592
Sequence Length:237
Protein Length:78
Start: 3908445
Stop: 3908681
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04981.1|AE004587_5 (AE004587) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 78/78 (100%), Positives = 78/78 (100%)
Sequence:
ATGAAAAAGACCGTAACTCTTGCCCTGCTGCTCGCTGCCAGCCTTGGCCTGGCCGCTTGCGACAAGAAAGAG
GAAGACAAGGCAGCGGCCCCGGCAGCTCCGGCTACCGAGACCCAGCCGAGCGCTCCGGCTACTCCCCCTGCC
GAGCCCAGCGCCCCGGCGCCGTCGAGCGACACTCCGGCAACCCCGCAGACTCCGGCACCGACTCCGGAGCAA
CCGCAACAGAACCAGCAATAA
Translation:
MKKTVTLALLLAASLGLAACDKKEEDKAAAPAAPATETQPSAPATPPAEPSAPAPSSDTPATPQTPAPTPEQ
PQQNQQ*
AnnotationID:5345GeneID:5340
AnnotatorUID: diggins
Modification Date/Time: 2005-02-25 14:02:49
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1592
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:10680
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:27828
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:5340

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7736 PA1592_tr translation of PA1592 78 99.99 99.99 0 399.0
196055 gb|AAG04981.1|AE004587_5 (AE004587) hypothetical protein PA1592 [Pseudomonas aeruginosa PAO1] 78 99.99 99.99 0 399.0
GC ORFID: 48342How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1592Glimmer Score:
Start: 1045464Stop: 1045228
Length: 237
Start Codon: ATGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: t_PA1592 translation of PA1592Homolog Bit Score 158.0
Other Homologs: t_PA1592 (ORF: GLIMMER)
GC ORF Sequence
ATGAAAAAGACCGTAACTCTTGCCCTGCTGCTCGCTGCCAGCCTTGGCCTGGCCGCTTGCGACAAGAAAGAG
GAAGACAAGGCAGCGGCCCCGGCAGCTCCGGCTACCGAGACCCAGCCGAGCGCTCCGGCTACTCCCCCTGCC
GAGCCCAGCGCCCCGGCGCCGTCGAGCGACACTCCGGCAACCCCGCAGACTCCGGCACCGACTCCGGAGCAA
CCGCAACAGAACCAGCAATAA