ViewGene
Locus Name:
GeneID:
Location:

GeneID:5338
TrivialName: PA14_02520
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_02520
PAO1 Ortholog Locus:PA0200
Sequence Length:213
Protein Length:70
Start: 226475
Stop: 226263
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03589.1|AE004458_4 (AE004458) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 70/70 (100%), Positives = 70/70 (100%)
Sequence:
ATGGCCAAGAAATTTCCCCTCCATCCCAGCCACCCGGAGCGCATCTGCTGGGGTTGCGACCGCTATTGCTCG
GCGGAATCTATGGGCTGCGGCAACGGCGCCAGCCGCACCCAGCATCCCAGCGAACTGTTCGGCGAGGACTGG
GCCGGTGAATGGGAAGTCGAAGGAACGGAGGACGCCAAGGAGCAGGAGGCGCCGGCACGCCAGGCCTGA
Translation:
MAKKFPLHPSHPERICWGCDRYCSAESMGCGNGASRTQHPSELFGEDWAGEWEVEGTEDAKEQEAPARQA*
AnnotationID:5343GeneID:5338
AnnotatorUID: diggins
Modification Date/Time: 2005-03-23 12:12:40
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0200
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:10676




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27824




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5338
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7734
                           PA0200_tr
                           translation of PA0200
                           70
                           99.99
                           99.99
                           0
                           401.0
     

     
     
196052
                           gb|AAG03589.1|AE004458_4
                           (AE004458) hypothetical protein PA0200 [Pseudomonas aeruginosa PAO1]
                           70
                           99.99
                           99.99
                           0
                           401.0
     

     
     
196053
                           emb|CAD14292.1|
                           (AL646060) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
                           75
                           56.00
                           72.00
                           12
                           256.0
     

     






      

          
GC ORFID: 48340How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0200Glimmer Score: 

          
Start: 6027816Stop: 6027604

          
Length: 213


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0200 translation of PA0200Homolog Bit Score 159.0

          
Other Homologs:  t_PA0200 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCCAAGAAATTTCCCCTCCATCCCAGCCACCCGGAGCGCATCTGCTGGGGTTGCGACCGCTATTGCTCG 
GCGGAATCTATGGGCTGCGGCAACGGCGCCAGCCGCACCCAGCATCCCAGCGAACTGTTCGGCGAGGACTGG 
GCCGGTGAATGGGAAGTCGAAGGAACGGAGGACGCCAAGGAGCAGGAGGCGCCGGCACGCCAGGCCTGA