ViewGene
Locus Name:
GeneID:
Location:

GeneID:5337
TrivialName: PA14_71590
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_71590
PAO1 Ortholog Locus:PA5424
Sequence Length:246
Protein Length:81
Start: 6377967
Stop: 6377722
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08809.1|AE004955_3 (AE004955) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 81/81 (100%), Positives = 81/81 (100%)
Sequence:
ATGGGATTAATCGGAACCATCATCGTCGGACTGATCGTTGGTCTCGTTGCACGCTTTCTGAAGCCAGGTGAC
GACAGCATGGGCTGGATCATGACCATCCTGCTCGGCATCGGCGGTTCGCTGCTGGCCACCTACGGCGGCCAG
GCGATCGGCTTCTACCAGGCCGGCCAGGCGGCCGGTTTCATCGGCGCGGTGGTCGGCGCCGTCGTACTGCTG
GTCATTTACGGCCTGATCAAGAAGAATTGA
Translation:
MGLIGTIIVGLIVGLVARFLKPGDDSMGWIMTILLGIGGSLLATYGGQAIGFYQAGQAAGFIGAVVGAVVLL
VIYGLIKKN*
AnnotationID:5342GeneID:5337
AnnotatorUID: diggins
Modification Date/Time: 2005-03-17 14:02:33
Gene Name:
Confidence Code:3
GeneProduct:putative membrane protein
Cell Localization:()
Synonyms:PA5424
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2261
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAE33024.1| (BX640444) putative membrane protein [Bordetella bronchiseptica]
          Length = 83

 Score = 90.5 bits (223), Expect = 2e-18
 Identities = 42/80 (52%), Positives = 62/80 (77%)

>emb|CAE36758.1| (BX640427) putative membrane protein [Bordetella parapertussis]
          Length = 83

 Score = 90.5 bits (223), Expect = 2e-18
 Identities = 42/80 (52%), Positives = 62/80 (77%)


>emb|CAD14779.1| (AL646062) PROBABLE TRANSMEMBRANE PROTEIN [Ralstonia
          solanacearum]
          Length = 82

 Score = 89.4 bits (220), Expect = 4e-18
 Identities = 43/81 (53%), Positives = 60/81 (74%)






 
Structural Features:
COG2261, Predicted membrane protein
CD-Length = 82 residues, 100.0% aligned
Score = 43.9 bits (104), Expect = 4e-06
Identities = 35/82 (42%), Positives = 48/82 (58%), Gaps = 1/82 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:10674




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:27822




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34647




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5337_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5337
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7733
                           PA5424_tr
                           translation of PA5424
                           81
                           99.99
                           99.99
                           0
                           402.0
     

     
     
196049
                           gb|AAG08809.1|AE004955_3
                           (AE004955) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           81
                           99.99
                           99.99
                           0
                           402.0
     

     
     
196050
                           gb|AAN70899.1|AE016734_3
                           (AE016794) conserved hypothetical protein [Pseudomonas putida KT2440]
                           81
                           85.18
                           92.59
                           0
                           359.0
     

     
     
196051
                           gb|AAO58911.1|
                           (AE016876) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           81
                           77.77
                           91.35
                           0
                           343.0
     

     






      

          
GC ORFID: 48339How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5424Glimmer Score: 

          
Start: 5641656Stop: 5641411

          
Length: 246


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5424 translation of PA5424Homolog Bit Score 159.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene4189 (ORF: BLASTX 137.0), t_PA5424 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGGATTAATCGGAACCATCATCGTCGGACTGATCGTTGGTCTCGTTGCACGCTTTCTGAAGCCAGGTGAC 
GACAGCATGGGCTGGATCATGACCATCCTGCTCGGCATCGGCGGTTCGCTGCTGGCCACCTACGGCGGCCAG 
GCGATCGGCTTCTACCAGGCCGGCCAGGCGGCCGGTTTCATCGGCGCGGTGGTCGGCGCCGTCGTACTGCTG 
GTCATTTACGGCCTGATCAAGAAGAATTGA